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comparison macros.xml @ 0:e50ea151f221 draft

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"planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit aa4a7f87d556b5af582d1ab8fe9a986922a59a1d"
author genouest
date Tue, 05 Oct 2021 12:35:42 +0000
parents
children cf241e076f7b
comparison
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-1:000000000000 0:e50ea151f221
1 <?xml version="1.0"?>
2 <macros>
3 <token name="@TOOL_VERSION@">2.1.6</token>
4 <token name="@VERSION_SUFFIX@">0</token>
5
6 <xml name="requirements">
7 <requirement type="package" version="@TOOL_VERSION@">braker2</requirement>
8 </xml>
9
10 <xml name="citations">
11 <citations>
12 <citation type="doi">10.1093/nargab/lqaa108</citation>
13 <citation type="doi">10.1007/978-1-4939-9173-0_5</citation>
14 <citation type="doi">10.1093/bioinformatics/btv661</citation>
15 <citation type="doi">10.1093/bioinformatics/btn013</citation>
16 <citation type="doi">10.1186/1471-2105-7-62</citation>
17 </citations>
18 </xml>
19
20 <xml name="augustus_species">
21 <!-- list generated from a Funannotate database directory, listing trained_species/* -->
22 <option value="adorsata">adorsata</option>
23 <option value="aedes">aedes</option>
24 <option value="amphimedon">amphimedon</option>
25 <option value="ancylostoma_ceylanicum">ancylostoma_ceylanicum</option>
26 <option value="anidulans">anidulans</option>
27 <option value="arabidopsis">arabidopsis</option>
28 <option value="aspergillus_fumigatus">aspergillus_fumigatus</option>
29 <option value="aspergillus_nidulans">aspergillus_nidulans</option>
30 <option value="aspergillus_oryzae">aspergillus_oryzae</option>
31 <option value="aspergillus_terreus">aspergillus_terreus</option>
32 <option value="bombus_impatiens1">bombus_impatiens1</option>
33 <option value="bombus_terrestris2">bombus_terrestris2</option>
34 <option value="botrytis_cinerea">botrytis_cinerea</option>
35 <option value="b_pseudomallei">b_pseudomallei</option>
36 <option value="brugia">brugia</option>
37 <option value="cacao">cacao</option>
38 <option value="caenorhabditis">caenorhabditis</option>
39 <option value="camponotus_floridanus">camponotus_floridanus</option>
40 <option value="candida_albicans">candida_albicans</option>
41 <option value="candida_guilliermondii">candida_guilliermondii</option>
42 <option value="candida_tropicalis">candida_tropicalis</option>
43 <option value="c_elegans_trsk">c_elegans_trsk</option>
44 <option value="chaetomium_globosum">chaetomium_globosum</option>
45 <option value="chicken">chicken</option>
46 <option value="chiloscyllium">chiloscyllium</option>
47 <option value="chlamy2011">chlamy2011</option>
48 <option value="chlamydomonas">chlamydomonas</option>
49 <option value="chlorella">chlorella</option>
50 <option value="ciona">ciona</option>
51 <option value="coccidioides_immitis">coccidioides_immitis</option>
52 <option value="Conidiobolus_coronatus">Conidiobolus_coronatus</option>
53 <option value="coprinus">coprinus</option>
54 <option value="coprinus_cinereus">coprinus_cinereus</option>
55 <option value="coyote_tobacco">coyote_tobacco</option>
56 <option value="cryptococcus">cryptococcus</option>
57 <option value="cryptococcus_neoformans_gattii">cryptococcus_neoformans_gattii</option>
58 <option value="cryptococcus_neoformans_neoformans_B">cryptococcus_neoformans_neoformans_B</option>
59 <option value="cryptococcus_neoformans_neoformans_JEC21">cryptococcus_neoformans_neoformans_JEC21</option>
60 <option value="culex">culex</option>
61 <option value="debaryomyces_hansenii">debaryomyces_hansenii</option>
62 <option value="E_coli_K12">E_coli_K12</option>
63 <option value="elephant_shark">elephant_shark</option>
64 <option value="encephalitozoon_cuniculi_GB">encephalitozoon_cuniculi_GB</option>
65 <option value="eremothecium_gossypii">eremothecium_gossypii</option>
66 <option value="fly">fly</option>
67 <option value="fly_exp">fly_exp</option>
68 <option value="fusarium">fusarium</option>
69 <option value="fusarium_graminearum">fusarium_graminearum</option>
70 <option value="galdieria">galdieria</option>
71 <option value="generic">generic</option>
72 <option value="heliconius_melpomene1">heliconius_melpomene1</option>
73 <option value="histoplasma">histoplasma</option>
74 <option value="histoplasma_capsulatum">histoplasma_capsulatum</option>
75 <option value="honeybee1">honeybee1</option>
76 <option value="human">human</option>
77 <option value="japaneselamprey">japaneselamprey</option>
78 <option value="kluyveromyces_lactis">kluyveromyces_lactis</option>
79 <option value="laccaria_bicolor">laccaria_bicolor</option>
80 <option value="leishmania_tarentolae">leishmania_tarentolae</option>
81 <option value="lodderomyces_elongisporus">lodderomyces_elongisporus</option>
82 <option value="magnaporthe_grisea">magnaporthe_grisea</option>
83 <option value="maize">maize</option>
84 <option value="maize5">maize5</option>
85 <option value="mnemiopsis_leidyi">mnemiopsis_leidyi</option>
86 <option value="nasonia">nasonia</option>
87 <option value="nematostella_vectensis">nematostella_vectensis</option>
88 <option value="neurospora">neurospora</option>
89 <option value="neurospora_crassa">neurospora_crassa</option>
90 <option value="parasteatoda">parasteatoda</option>
91 <option value="pchrysosporium">pchrysosporium</option>
92 <option value="pea_aphid">pea_aphid</option>
93 <option value="pfalciparum">pfalciparum</option>
94 <option value="phanerochaete_chrysosporium">phanerochaete_chrysosporium</option>
95 <option value="pichia_stipitis">pichia_stipitis</option>
96 <option value="pisaster">pisaster</option>
97 <option value="pneumocystis">pneumocystis</option>
98 <option value="rhincodon">rhincodon</option>
99 <option value="rhizopus_oryzae">rhizopus_oryzae</option>
100 <option value="rhodnius">rhodnius</option>
101 <option value="rice">rice</option>
102 <option value="saccharomyces">saccharomyces</option>
103 <option value="saccharomyces_cerevisiae_rm11-1a_1">saccharomyces_cerevisiae_rm11-1a_1</option>
104 <option value="saccharomyces_cerevisiae_S288C">saccharomyces_cerevisiae_S288C</option>
105 <option value="s_aureus">s_aureus</option>
106 <option value="schistosoma">schistosoma</option>
107 <option value="schistosoma2">schistosoma2</option>
108 <option value="schizosaccharomyces_pombe">schizosaccharomyces_pombe</option>
109 <option value="scyliorhinus">scyliorhinus</option>
110 <option value="sealamprey">sealamprey</option>
111 <option value="s_pneumoniae">s_pneumoniae</option>
112 <option value="strongylocentrotus_purpuratus">strongylocentrotus_purpuratus</option>
113 <option value="sulfolobus_solfataricus">sulfolobus_solfataricus</option>
114 <option value="template_prokaryotic">template_prokaryotic</option>
115 <option value="tetrahymena">tetrahymena</option>
116 <option value="thermoanaerobacter_tengcongensis">thermoanaerobacter_tengcongensis</option>
117 <option value="tomato">tomato</option>
118 <option value="toxoplasma">toxoplasma</option>
119 <option value="tribolium2012">tribolium2012</option>
120 <option value="trichinella">trichinella</option>
121 <option value="ustilago">ustilago</option>
122 <option value="ustilago_maydis">ustilago_maydis</option>
123 <option value="verticillium_albo_atrum1">verticillium_albo_atrum1</option>
124 <option value="verticillium_longisporum1">verticillium_longisporum1</option>
125 <option value="volvox">volvox</option>
126 <option value="wheat">wheat</option>
127 <option value="Xipophorus_maculatus">Xipophorus_maculatus</option>
128 <option value="yarrowia_lipolytica">yarrowia_lipolytica</option>
129 <option value="zebrafish">zebrafish</option>
130 </xml>
131 </macros>