# HG changeset patch
# User genouest
# Date 1752748548 0
# Node ID 0be6820e3268a1932770e8614131b9149c87121c
# Parent  bec8f57c9d8e9b42368ea0a3a27d112021b7cc2a
planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit 43caacb959b2d7b842e71737bd645be7ad155a04

diff -r bec8f57c9d8e -r 0be6820e3268 braker3.xml
--- a/braker3.xml	Tue Jul 01 14:01:14 2025 +0000
+++ b/braker3.xml	Thu Jul 17 10:35:48 2025 +0000
@@ -10,6 +10,12 @@
         <expand macro="requirements"/>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
+
+## Copy Augustus config dir to work dir, to make sure it's writable when running with containers
+cp -r "\$AUGUSTUS_CONFIG_PATH/" augustus_dir/ &&
+export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ &&
+
+
 braker.pl
 --genome '${genome}'
 $softmasking
diff -r bec8f57c9d8e -r 0be6820e3268 macros.xml
--- a/macros.xml	Tue Jul 01 14:01:14 2025 +0000
+++ b/macros.xml	Thu Jul 17 10:35:48 2025 +0000
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <macros>
     <token name="@TOOL_VERSION@">3.0.8</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@VERSION_SUFFIX@">2</token>
 
     <xml name="requirements">
         <container type="docker">teambraker/braker3:v3.0.7.6</container>