Mercurial > repos > genouest > feelnc2asko

comparison test-data/completeAnnot.gff3 @ 1:af75f883cab4 draft

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planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/feelnc2asko commit 35a0acc7d7337781f376517f0ef821d836fc4bb9
author genouest
date Thu, 12 Apr 2018 10:51:05 -0400
parents e323c49b8bcc
children d30ecf96e4cd
comparison
equal deleted inserted replaced
0:e323c49b8bcc 1:af75f883cab4
263 GL349622 Gnomon mRNA 2264010 2275204 . - . ID=rna335;Parent=LOC100159605;Dbxref=GeneID:100159605,Genbank:XM_001945754.4,APHIDBASE:ACYPI000962;Name=XM_001945754.4;feelnc_type=standard;gbkey=mRNA;gene=LOC100159605;model_evidence=Supporting evidence includes similarity to: 19 ESTs%2C 1 Protein%2C and 98%25 coverage of the annotated genomic feature by RNAseq alignments%2C including 33 samples with support for all annotated introns;product=heparan-alpha-glucosaminide N-acetyltransferase%2C transcript variant X3;transcript_id=XM_001945754.4 263 GL349622 Gnomon mRNA 2264010 2275204 . - . ID=rna335;Parent=LOC100159605;Dbxref=GeneID:100159605,Genbank:XM_001945754.4,APHIDBASE:ACYPI000962;Name=XM_001945754.4;feelnc_type=standard;gbkey=mRNA;gene=LOC100159605;model_evidence=Supporting evidence includes similarity to: 19 ESTs%2C 1 Protein%2C and 98%25 coverage of the annotated genomic feature by RNAseq alignments%2C including 33 samples with support for all annotated introns;product=heparan-alpha-glucosaminide N-acetyltransferase%2C transcript variant X3;transcript_id=XM_001945754.4
264 GL349622 Gnomon gene 2270755 2281456 . + . ID=LOC100168508;Dbxref=GeneID:100168508;Name=LOC100168508;feelnc_type=standard;gbkey=Gene;gene=LOC100168508;gene_biotype=protein_coding 264 GL349622 Gnomon gene 2270755 2281456 . + . ID=LOC100168508;Dbxref=GeneID:100168508;Name=LOC100168508;feelnc_type=standard;gbkey=Gene;gene=LOC100168508;gene_biotype=protein_coding
265 GL349622 Gnomon mRNA 2270755 2281456 . + . ID=rna336;Parent=LOC100168508;Dbxref=GeneID:100168508,Genbank:XM_008189547.2;Name=XM_008189547.2;feelnc_type=standard;gbkey=mRNA;gene=LOC100168508;model_evidence=Supporting evidence includes similarity to: 11 ESTs%2C 6 Proteins%2C and 100%25 coverage of the annotated genomic feature by RNAseq alignments%2C including 7 samples with support for all annotated introns;product=ATPase family AAA domain-containing protein 3;transcript_id=XM_008189547.2 265 GL349622 Gnomon mRNA 2270755 2281456 . + . ID=rna336;Parent=LOC100168508;Dbxref=GeneID:100168508,Genbank:XM_008189547.2;Name=XM_008189547.2;feelnc_type=standard;gbkey=mRNA;gene=LOC100168508;model_evidence=Supporting evidence includes similarity to: 11 ESTs%2C 6 Proteins%2C and 100%25 coverage of the annotated genomic feature by RNAseq alignments%2C including 7 samples with support for all annotated introns;product=ATPase family AAA domain-containing protein 3;transcript_id=XM_008189547.2
266 GL349622 Gnomon gene 2282156 2284359 . - . ID=LOC100165058;Dbxref=APHIDBASE:ACYPI006028,GeneID:100165058;Name=LOC100165058;feelnc_type=standard;gbkey=Gene;gene=LOC100165058;gene_biotype=protein_coding 266 GL349622 Gnomon gene 2282156 2284359 . - . ID=LOC100165058;Dbxref=APHIDBASE:ACYPI006028,GeneID:100165058;Name=LOC100165058;feelnc_type=standard;gbkey=Gene;gene=LOC100165058;gene_biotype=protein_coding
267 GL349622 Gnomon mRNA 2282156 2284359 . - . ID=rna337;Parent=LOC100165058;Dbxref=GeneID:100165058,Genbank:XM_001950091.4,APHIDBASE:ACYPI006028;Name=XM_001950091.4;feelnc_type=standard;gbkey=mRNA;gene=LOC100165058;model_evidence=Supporting evidence includes similarity to: 1 mRNA%2C 25 ESTs%2C 5 Proteins%2C and 99%25 coverage of the annotated genomic feature by RNAseq alignments%2C including 44 samples with support for all annotated introns;product=solute carrier family 35 member B1;transcript_id=XM_001950091.4 267 GL349622 Gnomon mRNA 2282156 2284359 . - . ID=rna337;Parent=LOC100165058;Dbxref=GeneID:100165058,Genbank:XM_001950091.4,APHIDBASE:ACYPI006028;Name=XM_001950091.4;feelnc_type=standard;gbkey=mRNA;gene=LOC100165058;model_evidence=Supporting evidence includes similarity to: 1 mRNA%2C 25 ESTs%2C 5 Proteins%2C and 99%25 coverage of the annotated genomic feature by RNAseq alignments%2C including 44 samples with support for all annotated introns;product=solute carrier family 35 member B1;transcript_id=XM_001950091.4
268 GL349622 Cufflinks gene 218384 219722 . - 1 268 GL349622 Cufflinks gene 2021789 2026165 . - 1 ID=CUFF.135
269 GL349622 Cufflinks mRNA 218384 219722 . - 1 ID=CUFF.77.1;Parent=CUFF.77;feelnc_type=lncRNA 269 GL349622 Cufflinks mRNA 2021789 2024477 . - 1 ID=CUFF.135.1;Parent=CUFF.135;feelnc_type=new
270 GL349622 Cufflinks gene 604709 609482 . - 1 270 GL349622 Cufflinks gene 1722435 1724318 . + 1 ID=CUFF.130
271 GL349622 Cufflinks mRNA 1722435 1724318 . + 1 ID=CUFF.130.1;Parent=CUFF.130;feelnc_type=new
272 GL349622 Cufflinks gene 1359442 1360152 . - 1 ID=CUFF.491
273 GL349622 Cufflinks mRNA 1359442 1360152 . - 1 ID=CUFF.491.1;Parent=CUFF.491;feelnc_type=lncRNA
274 GL349622 Cufflinks gene 1758962 1760807 . + 1 ID=CUFF.164
275 GL349622 Cufflinks mRNA 1758962 1760807 . + 1 ID=CUFF.164.1;Parent=CUFF.164;feelnc_type=new
276 GL349622 Cufflinks gene 604709 609482 . - 1 ID=CUFF.110
271 GL349622 Cufflinks mRNA 604709 609482 . - 1 ID=CUFF.110.1;Parent=CUFF.110;feelnc_type=lncRNA 277 GL349622 Cufflinks mRNA 604709 609482 . - 1 ID=CUFF.110.1;Parent=CUFF.110;feelnc_type=lncRNA
272 GL349622 Cufflinks gene 490324 536159 . - 1 278 GL349622 Cufflinks gene 490324 536159 . - 1 ID=CUFF.85
273 GL349622 Cufflinks mRNA 490324 536159 . - 1 ID=CUFF.85.1;Parent=CUFF.85;feelnc_type=lncRNA 279 GL349622 Cufflinks mRNA 490324 536159 . - 1 ID=CUFF.85.1;Parent=CUFF.85;feelnc_type=lncRNA
274 GL349622 Cufflinks gene 2021789 2026165 . - 1 280 GL349622 Cufflinks gene 1160606 1161032 . - 1 ID=CUFF.350
275 GL349622 Cufflinks mRNA 2021789 2026165 . - 1 ID=CUFF.135.2;Parent=CUFF.135;feelnc_type=lncRNA 281 GL349622 Cufflinks mRNA 1160606 1161032 . - 1 ID=CUFF.350.1;Parent=CUFF.350;feelnc_type=lncRNA
282 GL349622 Cufflinks gene 1200950 1218393 . + 1 ID=CUFF.289
283 GL349622 Cufflinks mRNA 1200950 1218393 . + 1 ID=CUFF.289.1;Parent=CUFF.289;feelnc_type=new
284 GL349622 Cufflinks gene 490324 536159 . - 1 ID=CUFF.85
285 GL349622 Cufflinks mRNA 533485 536159 . - 1 ID=CUFF.85.2;Parent=CUFF.85;feelnc_type=lncRNA
276 GL349622 Cufflinks gene 407420 409348 . + 1 ID=CUFF.82 286 GL349622 Cufflinks gene 407420 409348 . + 1 ID=CUFF.82
277 GL349622 Cufflinks mRNA 407420 409348 . + 1 ID=CUFF.82.1;Parent=CUFF.82;feelnc_type=new 287 GL349622 Cufflinks mRNA 407420 409348 . + 1 ID=CUFF.82.1;Parent=CUFF.82;feelnc_type=new
278 GL349622 Cufflinks gene 490324 536159 . - 1 288 GL349622 Cufflinks gene 218384 219722 . - 1 ID=CUFF.77
279 GL349622 Cufflinks mRNA 533485 536159 . - 1 ID=CUFF.85.2;Parent=CUFF.85;feelnc_type=lncRNA 289 GL349622 Cufflinks mRNA 218384 219722 . - 1 ID=CUFF.77.1;Parent=CUFF.77;feelnc_type=lncRNA
280 GL349622 Cufflinks gene 1722435 1724318 . + 1 ID=CUFF.130 290 GL349622 Cufflinks gene 400758 405243 . - 1 ID=CUFF.80
281 GL349622 Cufflinks mRNA 1722435 1724318 . + 1 ID=CUFF.130.1;Parent=CUFF.130;feelnc_type=new 291 GL349622 Cufflinks mRNA 400758 405243 . - 1 ID=CUFF.80.1;Parent=CUFF.80;feelnc_type=lncRNA
282 GL349622 Cufflinks gene 1200950 1218393 . + 1 ID=CUFF.289 292 GL349622 Cufflinks gene 2021789 2026165 . - 1 ID=CUFF.135
283 GL349622 Cufflinks mRNA 1200950 1218393 . + 1 ID=CUFF.289.1;Parent=CUFF.289;feelnc_type=new 293 GL349622 Cufflinks mRNA 2021789 2026165 . - 1 ID=CUFF.135.2;Parent=CUFF.135;feelnc_type=lncRNA
284 GL349622 Cufflinks gene 1758962 1760807 . + 1 ID=CUFF.164
285 GL349622 Cufflinks mRNA 1758962 1760807 . + 1 ID=CUFF.164.1;Parent=CUFF.164;feelnc_type=new
286 GL349622 Cufflinks gene 1359442 1360152 . - 1
287 GL349622 Cufflinks mRNA 1359442 1360152 . - 1 ID=CUFF.491.1;Parent=CUFF.491;feelnc_type=lncRNA
288 GL349622 Cufflinks gene 675392 678724 . + 1 ID=CUFF.91 294 GL349622 Cufflinks gene 675392 678724 . + 1 ID=CUFF.91
289 GL349622 Cufflinks mRNA 675392 678724 . + 1 ID=CUFF.91.1;Parent=CUFF.91;feelnc_type=new 295 GL349622 Cufflinks mRNA 675392 678724 . + 1 ID=CUFF.91.1;Parent=CUFF.91;feelnc_type=new
290 GL349622 Cufflinks gene 2021789 2026165 . - 1
291 GL349622 Cufflinks mRNA 2021789 2024477 . - 1 ID=CUFF.135.1;Parent=CUFF.135;feelnc_type=new
292 GL349622 Cufflinks gene 400758 405243 . - 1
293 GL349622 Cufflinks mRNA 400758 405243 . - 1 ID=CUFF.80.1;Parent=CUFF.80;feelnc_type=lncRNA
294 GL349622 Cufflinks gene 1160606 1161032 . - 1
295 GL349622 Cufflinks mRNA 1160606 1161032 . - 1 ID=CUFF.350.1;Parent=CUFF.350;feelnc_type=lncRNA