Mercurial > repos > genouest > gcms2isocor
diff gcms2isocor.xml @ 0:240ec5e4b0be draft
"planemo upload commit 41761a4c85f45ca0467c87ee55d420eb060e09dd"
author | genouest |
---|---|
date | Tue, 05 Oct 2021 12:27:48 +0000 |
parents | |
children | 6042d557e451 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gcms2isocor.xml Tue Oct 05 12:27:48 2021 +0000 @@ -0,0 +1,30 @@ +<tool id="gcms2isocor" name="Conversion GCMS PostRun Analysis to IsoCor" version="0.1.0" profile="21.05"> + <requirements> + <requirement type="package" version="8.0.121">openjdk</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + java -jar '$__tool_directory__/P2M2WorkflowsTools-assembly-0.1.jar' + #for $input in $input_gcms_files + #if $input + $input + #end if + #end for + --out '$output_isocor' + ]]></command> + <inputs> + <param type="data" name="input_gcms_files" multiple="true" format="txt" /> + </inputs> + <outputs> + <data name="output_isocor" format="tsv" /> + </outputs> + <tests> + <test> + <param name="input_gcms_files" value="13CPROT1.txt,13CPROT2.txt"/> + <output name="output_isocor" file="input_isocor.tsv"/> + </test> + </tests> + <help><![CDATA[ + Conversion from GCMS PostRun Analysis to Isocore. + Processes GCMS files with the following categories: Header, MS Quantitative Results. + ]]></help> +</tool>