# HG changeset patch
# User genouest
# Date 1528295732 14400
# Node ID f11370aba2861da2f3fd8ce65e7a9eac9f46f5b7
planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/logol commit 9ab3e793622c860adb69b1272927620abd106e73
diff -r 000000000000 -r f11370aba286 logol.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/logol.xml Wed Jun 06 10:35:32 2018 -0400
@@ -0,0 +1,143 @@
+
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+ Biological patterns matching
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+ logol
+ unzip
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+ logol.properties
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+ &&
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+ LogolMultiExec.sh
+ #if str( $options_input.options_input_selector ) == "model":
+ -m ${options_input.m}
+ #else
+ -g ${options_input.g}
+ #end if
+
+ -${type}
+ -s ${s}
+ -max ${max}
+
+ ${fasta}
+ ${gff}
+ ${all}
+
+ -maxmatchsize ${maxmatchsize}
+ -maxspacer ${maxspacer}
+ -lmax ${lmax}
+ -lmin ${lmin}
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+ ${forcesplit}
+
+ -conf logol.properties
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+ -out 'logol_results.zip'
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+ > ${log_file}
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+ &&
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+ unzip logol_results.zip
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+ ]]>
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+ 10.1007/978-3-319-09192-1_4
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diff -r 000000000000 -r f11370aba286 test-data/logol_results.zip
Binary file test-data/logol_results.zip has changed
diff -r 000000000000 -r f11370aba286 test-data/logol_results_multi_format.zip
Binary file test-data/logol_results_multi_format.zip has changed
diff -r 000000000000 -r f11370aba286 test-data/primer.fasta
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/primer.fasta Wed Jun 06 10:35:32 2018 -0400
@@ -0,0 +1,2 @@
+>sample sequence
+ccaaaacgtacgtttttttccccccccaaaacgtacgtttttttcccccc
diff -r 000000000000 -r f11370aba286 test-data/primer.lgd
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/primer.lgd Wed Jun 06 10:35:32 2018 -0400
@@ -0,0 +1,113 @@
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diff -r 000000000000 -r f11370aba286 test-data/primer.logol
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/primer.logol Wed Jun 06 10:35:32 2018 -0400
@@ -0,0 +1,4 @@
+def:{
+}
+mod1()==>"aaa","acgt":{_R1},?R1
+mod1()==*>SEQ1