Mercurial > repos > genouest > peptimapper_pep_novo_tag

changeset 1:cdf411232a46 draft default tip

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planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/peptimapper commit 040d09319fb0f43fafb1d3ebd99af41bce0f6bfd
author genouest
date Thu, 18 Jul 2024 10:26:24 +0000
parents 69599cfa8842
children
files pep_novo_tag.xml
diffstat 1 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/pep_novo_tag.xml	Fri Dec 10 10:35:28 2021 +0000
+++ b/pep_novo_tag.xml	Thu Jul 18 10:26:24 2024 +0000
@@ -1,7 +1,7 @@
-<tool id="peptimapper_pep_novo_tag" name="PepNovoTag" version="3.1">
+<tool id="peptimapper_pep_novo_tag" name="PepNovoTag" version="3.2">
     <description>generate short Peptide Sequence Tags (PSTs) from MS/MS spectra file</description>
     <requirements>
-        <container type="docker">dockerprotim/peptimapper</container>
+        <container type="docker">dockerprotim/peptimapper@sha256:d3eb807d7d5aa155f7b39d05a47420e0a0a9191d5fa867b6ca1be763f8a23bf1</container>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
 #import re
@@ -15,13 +15,13 @@
         <param name="t" type="select" label="Tag length" help="Tag length">
             <option value="3">3</option>
             <option value="4">4</option>
-            <option value="5" selected="selected">5</option>
+            <option value="5" selected="true">5</option>
             <option value="6">6</option>
         </param>
 
         <param name="n" type="select" label="Number of tags per spectra" help="Number of solutions">
             <option value="5">5</option>
-            <option value="10" selected="selected">10</option>
+            <option value="10" selected="true">10</option>
             <option value="15">15</option>
             <option value="20">20</option>
         </param>
@@ -34,7 +34,7 @@
             <param name="file" value="pepnovotag/sample_02.mgf"/>
             <param name="t" value="3"/>
             <param name="n" value="5"/>
-            <output name="tagsfile" file="pepnovotag/sample_02.mgf.3.5.tag"/>
+            <output name="pstsfile" file="pepnovotag/sample_02.mgf.3.5.tag"/>
         </test>
     </tests>
     <help><![CDATA[