Mercurial > repos > george-weingart > maaslin

comparison test-data/maaslin_input @ 8:e9677425c6c3 default tip

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Updated the structure of the libraries
author george.weingart@gmail.com
date Mon, 09 Feb 2015 12:17:40 -0500
parents e0b5980139d9
children
comparison
equal deleted inserted replaced
7:c72e14eabb08 8:e9677425c6c3
1 sample Sample1 Sample2 Sample3 Sample4 Sample5 Sample6 Sample7 Sample8
2 Age 87 78 3 2 32 10 39 96
3 Cohort Healthy Healthy Healthy Healthy IBD IBD IBD IBD
4 Favorite_color Yellow Blue Green Yellow Green Blue Green Blue
5 Height 60 72 63 67 71 65 61 64
6 Sex 0 1 0 1 1 0 1 0
7 Smoking 0 0 1 0 1 1 1 0
8 Star_Trek_Fan 1 1 0 0 1 0 0 1
9 Weight 151 258 195 172 202 210 139 140
10 Bacteria 1 1 1 1 1 1 1 1
11 Bacteria|Actinobacteria|Actinobacteria 0.0507585 0.252153 0.161725 0.0996769 0.144075 0.00592628 0.0399472 0.0663809
12 Bacteria|Actinobacteria|Actinobacteria|Bifidobacteriales|Bifidobacteriaceae|Bifidobacterium|1 0.0507585 0.0861117 0.00168464 0.0011966 0.0164305 0.00592628 0.0367439 0.0663809
13 Bacteria|Actinobacteria|Actinobacteria|Coriobacteriales|Coriobacteriaceae|1008 0 0.166041 0.16004 0.0984803 0.127644 0 0.00320332 0
14 Bacteria|Bacteroidetes|Bacteroidia|Bacteroidales 0.210385 0.0229631 0.154874 0.212157 0.044465 0.0861681 0.349727 0.29982
15 Bacteria|Bacteroidetes|Bacteroidia|Bacteroidales|Bacteroidaceae|Bacteroides|101 0.0110852 0.0229631 0.019991 0.0329065 0.044465 0.020979 0 0.0450837
16 Bacteria|Bacteroidetes|Bacteroidia|Bacteroidales|Prevotellaceae|1010 0.1993 0 0.134883 0.179251 0 0.065189 0.349727 0.254737
17 Bacteria|Firmicutes 0.738856 0.719806 0.67655 0.668541 0.663381 0.730117 0.417939 0.443231
18 Bacteria|Firmicutes|Bacilli|Lactobacillales 0.37713 0.0119232 0.0982704 0.102549 0.45307 0.13903 0.0192199 0
19 Bacteria|Firmicutes|Bacilli|Lactobacillales|Enterococcaceae|1023 0.290198 0.0119232 0 0.00538471 0.351818 0.0321204 0.0192199 0
20 Bacteria|Firmicutes|Bacilli|Lactobacillales|Unclassified|1013 0.0869312 0 0.0982704 0.0971641 0.101253 0.10691 0 0
21 Bacteria|Firmicutes|Clostridia|Clostridiales 0.29755 0.562817 0.503145 0.388656 0.143561 0.142349 0.271528 0
22 Bacteria|Firmicutes|Clostridia|Clostridiales|Lachnospiraceae 0.233372 0.41157 0.423967 0.329065 0.142226 0.142349 0.266817 0
23 Bacteria|Firmicutes|Clostridia|Clostridiales|Lachnospiraceae|Anaerostipes|1026 0 0 0.143194 0 0.131957 0.142349 0.228754 0
24 Bacteria|Firmicutes|Clostridia|Clostridiales|Lachnospiraceae|Roseburia|1032 0.233372 0.41157 0.280773 0.329065 0.010269 0 0.0380629 0
25 Bacteria|Firmicutes|Clostridia|Clostridiales|Ruminococcaceae|1156 0.0641774 0.151248 0.0791779 0.0595908 0.00133498 0 0.00471076 0
26 Bacteria|Firmicutes|Erysipelotrichi|Erysipelotrichales|Erysipelotrichaceae|Coprobacillus|1179 0 0.00971517 0.0049416 0.123489 0 0.380586 0 0.380998
27 Bacteria|Firmicutes|Unclassified|1232 0.0641774 0.13535 0.0701932 0.0538471 0.0667488 0.0681522 0.127191 0.0622321
28 Bacteria|Proteobacteria 0 0.00507838 0.00685085 0.0196243 0.14808 0.177788 0.192387 0.190568
29 Bacteria|Proteobacteria|Betaproteobacteria|Burkholderiales|Alcaligenaceae|Parasutterella|1344 0 0.00507838 0.0012354 0.00167524 0.0351201 0 0.00395704 0
30 Bacteria|Proteobacteria|Gammaproteobacteria|Enterobacteriales|Enterobacteriaceae|Escherichia/Shigella|1532 0 0 0.00561545 0.017949 0.11296 0.177788 0.18843 0.190568