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annotate test-data/metaphlan_output @ 2:90de8f4531b9 draft default tip

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Added requirements in the metaphlan.xml
author george-weingart
date Mon, 19 May 2014 15:59:46 -0400
parents 921c5be02e81
children
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921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
1 k__Bacteria 97.45034
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
2 k__Archaea 2.54966
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
3 k__Bacteria|p__Firmicutes 66.42382
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
4 k__Bacteria|p__Actinobacteria 10.87008
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
5 k__Bacteria|p__Proteobacteria 10.12021
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
6 k__Bacteria|p__Chlorobi 7.39089
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
7 k__Archaea|p__Euryarchaeota 2.54966
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
8 k__Bacteria|p__Chloroflexi 2.0923
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
9 k__Bacteria|p__Bacteroidetes 0.30255
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
10 k__Bacteria|p__Cyanobacteria 0.25049
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
11 k__Bacteria|p__Firmicutes|c__Clostridia 40.17564
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
12 k__Bacteria|p__Firmicutes|c__Bacilli 26.24818
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
13 k__Bacteria|p__Actinobacteria|c__Actinobacteria 10.87008
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
14 k__Bacteria|p__Chlorobi|c__Chlorobia 7.39089
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
15 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria 5.74506
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
16 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria 3.28512
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
17 k__Bacteria|p__Chloroflexi|c__Thermomicrobia 2.0923
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
18 k__Archaea|p__Euryarchaeota|c__Methanobacteria 1.42305
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
19 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria 1.09004
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
20 k__Archaea|p__Euryarchaeota|c__Methanomicrobia 1.0862
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
21 k__Bacteria|p__Bacteroidetes|c__Sphingobacteria 0.30255
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
22 k__Bacteria|p__Cyanobacteria|c__Gloeobacteria 0.25049
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
23 k__Archaea|p__Euryarchaeota|c__Thermococci 0.04042
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
24 k__Bacteria|p__Firmicutes|c__Clostridia|o__Thermoanaerobacterales 40.17564
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
25 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales 26.24818
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
26 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales 10.87008
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
27 k__Bacteria|p__Chlorobi|c__Chlorobia|o__Chlorobiales 7.39089
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
28 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales 2.20908
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
29 k__Bacteria|p__Chloroflexi|c__Thermomicrobia|o__Sphaerobacterales 2.0923
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
30 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales 2.05259
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
31 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Alteromonadales 2.04746
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
32 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales 1.645
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
33 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales 1.42305
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
34 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales 1.09004
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
35 k__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales 1.0862
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
36 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodospirillales 1.02351
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
37 k__Bacteria|p__Bacteroidetes|c__Sphingobacteria|o__Sphingobacteriales 0.30255
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
38 k__Bacteria|p__Cyanobacteria|c__Gloeobacteria|o__Gloeobacterales 0.25049
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
39 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales 0.05253
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
40 k__Archaea|p__Euryarchaeota|c__Thermococci|o__Thermococcales 0.04042
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
41 k__Bacteria|p__Firmicutes|c__Clostridia|o__Thermoanaerobacterales|f__Thermoanaerobacteraceae 38.18304
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
42 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae 25.64289
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
43 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Micrococcaceae 10.87008
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
44 k__Bacteria|p__Chlorobi|c__Chlorobia|o__Chlorobiales|f__Chlorobiaceae 7.39089
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
45 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae 2.20908
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
46 k__Bacteria|p__Chloroflexi|c__Thermomicrobia|o__Sphaerobacterales|f__Sphaerobacteraceae 2.0923
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
47 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae 2.05259
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
48 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Alteromonadales|f__Shewanellaceae 2.04746
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
49 k__Bacteria|p__Firmicutes|c__Clostridia|o__Thermoanaerobacterales|f__Thermoanaerobacterales_Family_III_Incertae_Sedis 1.9926
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
50 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae 1.645
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
51 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae 1.30676
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
52 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae 1.09004
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
53 k__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales|f__Methanosarcinaceae 1.0862
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
54 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodospirillales|f__Rhodospirillaceae 1.02351
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
55 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae 0.60528
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
56 k__Bacteria|p__Bacteroidetes|c__Sphingobacteria|o__Sphingobacteriales|f__Chitinophagaceae 0.30255
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
57 k__Bacteria|p__Cyanobacteria|c__Gloeobacteria|o__Gloeobacterales|f__Gloeobacteraceae 0.25049
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
58 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanothermaceae 0.11628
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
59 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Methylobacteriaceae 0.05253
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
60 k__Archaea|p__Euryarchaeota|c__Thermococci|o__Thermococcales|f__Thermococcaceae 0.04042
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
61 k__Bacteria|p__Firmicutes|c__Clostridia|o__Thermoanaerobacterales|f__Thermoanaerobacteraceae|g__Moorella 38.18304
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
62 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus 25.64289
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
63 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Micrococcaceae|g__Micrococcus 10.87008
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
64 k__Bacteria|p__Chlorobi|c__Chlorobia|o__Chlorobiales|f__Chlorobiaceae|g__Chlorobium 7.39089
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
65 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter 2.20908
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
66 k__Bacteria|p__Chloroflexi|c__Thermomicrobia|o__Sphaerobacterales|f__Sphaerobacteraceae|g__Sphaerobacter 2.0923
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
67 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Alteromonadales|f__Shewanellaceae|g__Shewanella 2.04746
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
68 k__Bacteria|p__Firmicutes|c__Clostridia|o__Thermoanaerobacterales|f__Thermoanaerobacterales_Family_III_Incertae_Sedis|g__Caldicellulosiruptor 1.9926
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
69 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Edwardsiella 1.899
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
70 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Vibrio 1.645
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
71 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanosphaera 1.30676
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
72 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Delftia 1.09004
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
73 k__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales|f__Methanosarcinaceae|g__Methanosarcina 1.0862
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
74 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodospirillales|f__Rhodospirillaceae|g__Rhodospirillum 1.02351
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
75 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus 0.60528
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
76 k__Bacteria|p__Bacteroidetes|c__Sphingobacteria|o__Sphingobacteriales|f__Chitinophagaceae|g__Chitinophaga 0.30255
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
77 k__Bacteria|p__Cyanobacteria|c__Gloeobacteria|o__Gloeobacterales|f__Gloeobacteraceae|g__Gloeobacter 0.25049
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
78 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Pantoea 0.15359
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
79 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanothermaceae|g__Methanothermus 0.11628
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
80 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Methylobacteriaceae|g__Methylobacterium 0.05253
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
81 k__Archaea|p__Euryarchaeota|c__Thermococci|o__Thermococcales|f__Thermococcaceae|g__Thermococcus 0.04042
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
82 k__Bacteria|p__Firmicutes|c__Clostridia|o__Thermoanaerobacterales|f__Thermoanaerobacteraceae|g__Moorella|s__Moorella_thermoacetica 38.18304
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
83 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus_plantarum 25.64289
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
84 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Micrococcaceae|g__Micrococcus|s__Micrococcus_luteus 10.87008
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
85 k__Bacteria|p__Chlorobi|c__Chlorobia|o__Chlorobiales|f__Chlorobiaceae|g__Chlorobium|s__Chlorobium_vibrioformis 7.39089
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
86 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter|s__Rhodobacter_sphaeroides 2.20908
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
87 k__Bacteria|p__Chloroflexi|c__Thermomicrobia|o__Sphaerobacterales|f__Sphaerobacteraceae|g__Sphaerobacter|s__Sphaerobacter_thermophilus 2.0923
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
88 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Alteromonadales|f__Shewanellaceae|g__Shewanella|s__Shewanella_denitrificans 2.04746
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
89 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Edwardsiella|s__Edwardsiella_tarda 1.899
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
90 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanosphaera|s__Methanosphaera_stadtmanae 1.30676
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
91 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Vibrio|s__Vibrio_harveyi 1.2913
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
92 k__Bacteria|p__Firmicutes|c__Clostridia|o__Thermoanaerobacterales|f__Thermoanaerobacterales_Family_III_Incertae_Sedis|g__Caldicellulosiruptor|s__Caldicellulosiruptor_saccharolyticus 1.13063
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
93 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Delftia|s__Delftia_acidovorans 1.09004
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
94 k__Archaea|p__Euryarchaeota|c__Methanomicrobia|o__Methanosarcinales|f__Methanosarcinaceae|g__Methanosarcina|s__Methanosarcina_barkeri 1.0862
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
95 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodospirillales|f__Rhodospirillaceae|g__Rhodospirillum|s__Rhodospirillum_rubrum 1.02351
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
96 k__Bacteria|p__Firmicutes|c__Clostridia|o__Thermoanaerobacterales|f__Thermoanaerobacterales_Family_III_Incertae_Sedis|g__Caldicellulosiruptor|s__Caldicellulosiruptor_obsidiansis 0.86197
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
97 k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_thermophilus 0.60528
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
98 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Vibrio|s__Vibrio_cholerae 0.3537
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
99 k__Bacteria|p__Bacteroidetes|c__Sphingobacteria|o__Sphingobacteriales|f__Chitinophagaceae|g__Chitinophaga|s__Chitinophaga_pinensis 0.30255
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
100 k__Bacteria|p__Cyanobacteria|c__Gloeobacteria|o__Gloeobacterales|f__Gloeobacteraceae|g__Gloeobacter|s__Gloeobacter_violaceus 0.25049
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
101 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Pantoea|s__Pantoea_ananatis 0.15359
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
102 k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanothermaceae|g__Methanothermus|s__Methanothermus_fervidus 0.11628
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
103 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Methylobacteriaceae|g__Methylobacterium|s__Methylobacterium_extorquens 0.05253
921c5be02e81 Metaphlan
george-weingart
parents:
diff changeset
104 k__Archaea|p__Euryarchaeota|c__Thermococci|o__Thermococcales|f__Thermococcaceae|g__Thermococcus|s__Thermococcus_kodakaraensis 0.04042