Mercurial > repos > george-weingart > micropita
comparison micropita_galaxy_ReadMe.txt @ 0:2f4f6f08c8c4 draft
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| author | george-weingart |
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| date | Tue, 13 May 2014 21:58:57 -0400 |
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| -1:000000000000 | 0:2f4f6f08c8c4 |
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| 1 #Installation instructions for microPITA in a galaxy environment. | |
| 2 These instructions require the Mercurial versioning system, galaxy, and an internet connection. | |
| 3 | |
| 4 #For general reference about microPita please refer to: | |
| 5 ``` | |
| 6 https://bitbucket.org/biobakery/micropita | |
| 7 ``` | |
| 8 | |
| 9 | |
| 10 | |
| 11 | |
| 12 #Installation Instructions | |
| 13 In the "galaxy-dist/tools" directory install micropita by typing in a terminal: | |
| 14 ``` | |
| 15 hg clone https://bitbucket.org/biobakery/micropita | |
| 16 ``` | |
| 17 | |
| 18 | |
| 19 Update member tool_conf.xml in the galaxy directory adding the following: | |
| 20 ``` | |
| 21 <section name="micropita" id="micropita"> | |
| 22 <tool file="micropita/galaxy/micropita.xml"/> | |
| 23 </section> | |
| 24 ``` | |
| 25 | |
| 26 Update member datatypes_conf.xml in the galaxy directory adding the following: | |
| 27 ``` | |
| 28 <datatype extension="micropita" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true"/> | |
| 29 ``` | |
| 30 | |
| 31 Copy the 2 *.png members to /galaxy/static/images | |
| 32 | |
| 33 Recycle galaxy | |
| 34 |