Mercurial > repos > gga > apollo_create_account

comparison test-data/dataset_1_files/data/trackList.json @ 10:a46a509386d3 draft

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"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 08015be1ee8a784e0619f961aaa724857debfd6f"
author gga
date Mon, 02 Dec 2019 05:50:13 -0500
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9:0c3a940da13d 10:a46a509386d3
1 {
2 "formatVersion" : 1,
3 "hideGenomeOptions" : false,
4 "names" : {
5 "type" : "Hash",
6 "url" : "names/"
7 },
8 "plugins" : [
9 {
10 "location" : "https://cdn.jsdelivr.net/gh/TAMU-CPT/blastview@97572a21b7f011c2b4d9a0b5af40e292d694cbef/",
11 "name" : "BlastView"
12 }
13 ],
14 "refSeqs" : "seq/genome.fasta.fai",
15 "shareLink" : true,
16 "show_menu" : true,
17 "show_nav" : true,
18 "show_overview" : true,
19 "show_tracklist" : true,
20 "tracks" : [
21 {
22 "category" : "Reference sequence",
23 "codonStarts" : [
24 "TTG",
25 "CTG",
26 "ATG"
27 ],
28 "codonStops" : [
29 "TAA",
30 "TAG",
31 "TGA"
32 ],
33 "codonTable" : {
34 "AAA" : "K",
35 "AAC" : "N",
36 "AAG" : "K",
37 "AAT" : "N",
38 "ACA" : "T",
39 "ACC" : "T",
40 "ACG" : "T",
41 "ACT" : "T",
42 "AGA" : "R",
43 "AGC" : "S",
44 "AGG" : "R",
45 "AGT" : "S",
46 "ATA" : "I",
47 "ATC" : "I",
48 "ATG" : "M",
49 "ATT" : "I",
50 "CAA" : "Q",
51 "CAC" : "H",
52 "CAG" : "Q",
53 "CAT" : "H",
54 "CCA" : "P",
55 "CCC" : "P",
56 "CCG" : "P",
57 "CCT" : "P",
58 "CGA" : "R",
59 "CGC" : "R",
60 "CGG" : "R",
61 "CGT" : "R",
62 "CTA" : "L",
63 "CTC" : "L",
64 "CTG" : "L",
65 "CTT" : "L",
66 "GAA" : "E",
67 "GAC" : "D",
68 "GAG" : "E",
69 "GAT" : "D",
70 "GCA" : "A",
71 "GCC" : "A",
72 "GCG" : "A",
73 "GCT" : "A",
74 "GGA" : "G",
75 "GGC" : "G",
76 "GGG" : "G",
77 "GGT" : "G",
78 "GTA" : "V",
79 "GTC" : "V",
80 "GTG" : "V",
81 "GTT" : "V",
82 "TAC" : "Y",
83 "TAT" : "Y",
84 "TCA" : "S",
85 "TCC" : "S",
86 "TCG" : "S",
87 "TCT" : "S",
88 "TGC" : "C",
89 "TGG" : "W",
90 "TGT" : "C",
91 "TTA" : "L",
92 "TTC" : "F",
93 "TTG" : "L",
94 "TTT" : "F"
95 },
96 "faiUrlTemplate" : "seq/genome.fasta.fai",
97 "key" : "Reference sequence",
98 "label" : "DNA",
99 "metadata" : {
100 "dataset_edam_format" : "<a target=\"_blank\" href=\"http://edamontology.org/format_1929\">fasta</a>",
101 "dataset_file_ext" : "fasta",
102 "dataset_hid" : "1",
103 "dataset_id" : "7495a4247e72f5f1",
104 "dataset_size" : "171.6 KB",
105 "history_display_name" : "<a target=\"_blank\" href=\"http://localhost/history/view/d29e465b351a50c9\">Unnamed history</a>",
106 "history_id" : "d29e465b351a50c9",
107 "history_user_email" : "<a href=\"mailto:anthony.bretaudeau@irisa.fr\">anthony.bretaudeau@irisa.fr</a>",
108 "history_user_id" : "17",
109 "metadata_data_lines" : "2881",
110 "metadata_dbkey" : "?",
111 "metadata_sequences" : "1",
112 "tool_tool" : "<a target=\"_blank\" href=\"http://localhost/datasets/7495a4247e72f5f1/show_params\">upload1</a>",
113 "tool_tool_id" : "upload1",
114 "tool_tool_version" : "1.1.6"
115 },
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117 "storeClass" : "JBrowse/Store/SeqFeature/IndexedFasta",
118 "type" : "SequenceTrack",
119 "urlTemplate" : "seq/genome.fasta",
120 "useAsRefSeqStore" : 1
121 },
122 {
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124 "key" : "merlin.gff",
125 "label" : "4ced49b280a72a29f1b922ae1a9664c8_0",
126 "maxHeight" : "600",
127 "menuTemplate" : [
128 {},
129 {},
130 {},
131 {}
132 ],
133 "metadata" : {
134 "dataset_edam_format" : "<a target=\"_blank\" href=\"http://edamontology.org/format_1975\">gff3</a>",
135 "dataset_file_ext" : "gff3",
136 "dataset_hid" : "2",
137 "dataset_id" : "b02ee2031011d9cf",
138 "dataset_size" : "110.3 KB",
139 "history_display_name" : "<a target=\"_blank\" href=\"http://localhost/history/view/d29e465b351a50c9\">Unnamed history</a>",
140 "history_id" : "d29e465b351a50c9",
141 "history_user_email" : "<a href=\"mailto:anthony.bretaudeau@irisa.fr\">anthony.bretaudeau@irisa.fr</a>",
142 "history_user_id" : "17",
143 "metadata_attributes" : "4",
144 "metadata_columns" : "9",
145 "metadata_comment_lines" : "2",
146 "metadata_data_lines" : "1228",
147 "metadata_dbkey" : "?",
148 "metadata_delimiter" : "__tc__",
149 "tool_tool" : "<a target=\"_blank\" href=\"http://localhost/datasets/b02ee2031011d9cf/show_params\">upload1</a>",
150 "tool_tool_id" : "upload1",
151 "tool_tool_version" : "1.1.6"
152 },
153 "overrideDraggable" : false,
154 "overridePlugins" : false,
155 "storeClass" : "JBrowse/Store/SeqFeature/GFF3Tabix",
156 "style" : {
157 "className" : "feature",
158 "color" : "#a6cee3",
159 "description" : "note,description",
160 "label" : "product,name,id"
161 },
162 "trackType" : "NeatHTMLFeatures/View/Track/NeatFeatures",
163 "type" : "NeatHTMLFeatures/View/Track/NeatFeatures",
164 "urlTemplate" : "raw/4ced49b280a72a29f1b922ae1a9664c8_0.gff.gz"
165 }
166 ],
167 "view" : {
168 "trackPadding" : 20
169 }
170 }