# HG changeset patch
# User gga
# Date 1554919560 14400
# Node ID e80d29fd2a33904603de00536200a2855cb4a63b
# Parent  0d9cb9e56ca05f81a732a6f5accaf78746bbe2ba
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 2488ac4ea447c45886ce5c7b102fb28c5839d26b

diff -r 0d9cb9e56ca0 -r e80d29fd2a33 create_or_update_organism.py
--- a/create_or_update_organism.py	Fri Mar 15 06:05:10 2019 -0400
+++ b/create_or_update_organism.py	Wed Apr 10 14:06:00 2019 -0400
@@ -47,7 +47,7 @@
     if(os.path.exists(args.jbrowse)):
         shutil.rmtree(args.jbrowse)
     # Copy files
-    shutil.copytree(args.jbrowse_src, args.jbrowse)
+    shutil.copytree(args.jbrowse_src, args.jbrowse, symlinks=True)
 
     path_fasta = args.jbrowse + '/seq/genome.fasta'
     path_2bit = args.jbrowse + '/seq/genome.2bit'