Mercurial > repos > gga > apollo_create_or_update

diff create_or_update_organism.xml @ 1:b194ffbd6ae1 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f55bad7dcf56bd9625874cd89f3894aee35d91ef
author gga
date Tue, 19 Sep 2017 12:22:46 -0400
parents cd595b5d890a
children aee984715db1
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line diff
--- a/create_or_update_organism.xml	Mon Sep 11 05:46:00 2017 -0400
+++ b/create_or_update_organism.xml	Tue Sep 19 12:22:46 2017 -0400
@@ -7,7 +7,7 @@
   <expand macro="requirements"/>
   <code file="webapollo.py"/>
   <command detect_errors="aggressive"><![CDATA[
-cp -R '${jbrowse.extra_files_path}/data/' '@DATA_DIR@/${jbrowse.id}'
+cp -R '${jbrowse.extra_files_path}/data/' "@DATA_DIR@/${jbrowse.id}"
 
 &&
 
@@ -25,7 +25,7 @@
 
 @ORG_OR_GUESS@
 
-'@DATA_DIR@/${jbrowse.id}'
+"@DATA_DIR@/${jbrowse.id}"
 
 $__user_email__