Mercurial > repos > gga > apollo_create_or_update
diff create_or_update_organism.xml @ 7:cfeab429f660 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit b9143221aee2cd09e1334ee56ff9651550b1797a
author | gga |
---|---|
date | Fri, 15 Mar 2019 06:04:22 -0400 |
parents | 696a1962212e |
children | 29ce13734a5c |
line wrap: on
line diff
--- a/create_or_update_organism.xml Tue Oct 30 04:29:26 2018 -0400 +++ b/create_or_update_organism.xml Fri Mar 15 06:04:22 2019 -0400 @@ -1,15 +1,14 @@ <?xml version="1.0"?> -<tool id="create_or_update" name="Create or Update Organism" version="3.3"> +<tool id="create_or_update" name="Create or Update Organism" version="3.4"> <description>will create the organism if it doesn't exist, and update otherwise</description> <macros> <import>macros.xml</import> </macros> - <expand macro="requirements"/> + <expand macro="requirements"> + <requirement type="package" version="377">ucsc-fatotwobit</requirement> + </expand> <code file="webapollo.py"/> <command detect_errors="aggressive"><![CDATA[ -cp -R '${jbrowse.extra_files_path}/data/' "@DATA_DIR@/${jbrowse.id}" - -&& python $__tool_directory__/create_or_update_organism.py @@ -20,11 +19,14 @@ #if str($group) != "None": --group '${group}' #end if + ${remove_old_directory} $public @ORG_OR_GUESS@ +'${jbrowse.extra_files_path}/data/' + "@DATA_DIR@/${jbrowse.id}" $__user_email__