Mercurial > repos > gga > apollo_delete_features

comparison delete_features.xml @ 5:f7e9c792047b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 85194fa009ead2c34720faab61a4143fc29d17c2
author gga
date Fri, 31 Aug 2018 09:34:42 -0400
parents 40b26f8269a3
children 2adc3aa47d15
comparison
equal deleted inserted replaced
4:40b26f8269a3 5:f7e9c792047b
13 @ADMIN_AUTH@ 13 @ADMIN_AUTH@
14 @ORG_OR_GUESS@ 14 @ORG_OR_GUESS@
15 --gff "$gff_out" 15 --gff "$gff_out"
16 --fasta "$fasta_out" 16 --fasta "$fasta_out"
17 --json "$json_out" 17 --json "$json_out"
18 "$__user_email__"
18 19
19 && 20 &&
20 21
21 ## Now we delete 22 ## Now we delete
22 python $__tool_directory__/delete_features.py 23 python $__tool_directory__/delete_features.py
40 <option value="tRNA">tRNAs</option> 41 <option value="tRNA">tRNAs</option>
41 </param> 42 </param>
42 <param name="ask_one" type="boolean" truevalue="yes" falsevalue="" label="Are you SURE you want to do this?" help="It will PERMANENTLY delete all of the features on this organism."/> 43 <param name="ask_one" type="boolean" truevalue="yes" falsevalue="" label="Are you SURE you want to do this?" help="It will PERMANENTLY delete all of the features on this organism."/>
43 </inputs> 44 </inputs>
44 <outputs> 45 <outputs>
45 <data format="tabular" name="output" label="Process and Error Log"/> 46 <data format="tabular" name="output" label="Process and Error Log">
47 <discover_datasets pattern="(?P&lt;designation&gt;.+)\.txt" format="tabular" visible="true"/>
48 </data>
46 49
47 <data format="gff3" name="gff_out" label="Annotations from Apollo" hidden="true"/> 50 <data format="gff3" name="gff_out" label="Annotations from Apollo" hidden="true"/>
48 <data format="fasta" name="fasta_out" label="Sequence(s) from Apollo" hidden="true"/> 51 <data format="fasta" name="fasta_out" label="Sequence(s) from Apollo" hidden="true"/>
49 <data format="json" name="json_out" label="Metadata from Apollo" hidden="true"/> 52 <data format="json" name="json_out" label="Metadata from Apollo" hidden="true"/>
50 </outputs> 53 </outputs>