Mercurial > repos > gga > apollo_delete_features

diff delete_features.xml @ 13:21a8cad7dfa5 draft

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"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 7bf18c69becc57152efdadedf7ebd0bcfa382a15"
author gga
date Mon, 29 Jun 2020 09:12:19 -0400
parents df0e4eb2dfa5
children
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line diff
--- a/delete_features.xml	Fri Apr 24 09:02:02 2020 -0400
+++ b/delete_features.xml	Mon Jun 29 09:12:19 2020 -0400
@@ -14,10 +14,10 @@
 	python '$__tool_directory__/export.py'
 	@ORG_OR_GUESS@
 	--gff '$gff_out'
-        --fasta_pep '$fasta_pep'
-        --fasta_cds '$fasta_cds'
-        --fasta_cdna '$fasta_cdna'
-        --vcf '$vcf_out'
+  --fasta_pep '$fasta_pep'
+  --fasta_cds '$fasta_cds'
+  --fasta_cdna '$fasta_cdna'
+  --vcf '$vcf_out'
 	--json '$json_out'
   '$__user_email__'
 
@@ -70,7 +70,6 @@
               <assert_contents>
                   <has_text text="##sequence-region Merlin 1 172788" />
                   <has_text text="owner=admin@local.host;" />
-                  <has_text text="Name=cds-not-under-exon" />
               </assert_contents>
           </output>
           <output name="fasta_pep" file="export/pep.fa" lines_diff="12"/>