Mercurial > repos > gga > apollo_delete_features

diff test-data/export/pep.fa @ 13:21a8cad7dfa5 draft

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"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 7bf18c69becc57152efdadedf7ebd0bcfa382a15"
author gga
date Mon, 29 Jun 2020 09:12:19 -0400
parents df0e4eb2dfa5
children
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--- a/test-data/export/pep.fa	Fri Apr 24 09:02:02 2020 -0400
+++ b/test-data/export/pep.fa	Mon Jun 29 09:12:19 2020 -0400
@@ -1,20 +1,26 @@
->ff2fe902-7bab-431c-be82-30ed072915d1 (mRNA) 229 residues [Merlin:2-691 + strand] [peptide] name=Unknown
+>df4157db-1481-4120-858c-e6a4c0f78547 (mRNA) 229 residues [Merlin:2-691 + strand] [peptide] name=Merlin_1_mRNA-00001
 RLDKGTLLYRGQKLDLPTFEHNAENKLFYFRNYVSTSLKPLIFGEFGRMFMALDDDTTIY
 TAETPDDYNRFANPEDIIDIGATQKDSFDDNNNDGTSINIGKQVNLGFVISGAENVRVIV
 PGSLTEYPEEAEVILPRGTLLKINKITTQVDKRSNKFMVEGSIVPPSEQIDESVEIYDGD
 LFMETGEVVKLSGFMQFVNESAYDEEQNQMAAEILSGFLDIDDMPRKFR
->f2e1909a-1d40-4a49-a67b-5fe2afdc4957 (mRNA) 2 residues [Merlin:752-1039 + strand] [peptide] name=Unknown
-KF
->12fe0db6-c8e1-4bc9-b594-87c92c6c9669 (mRNA) 35 residues [Merlin:1067-2011 - strand] [peptide] name=Unknown
-HLNYHCRYSTAGKKVWCIEISYWSNEQSCCSVFIR
->58fc8255-95ed-4417-a373-238f826810ac (mRNA) 351 residues [Merlin:2011-3066 - strand] [peptide] name=Unknown
+>eedd9b31-f1dd-487c-a3ab-6435b2214685 (mRNA) 95 residues [Merlin:752-1039 + strand] [peptide] name=mrna-name-00001
+MKSIFRINGVEIVVEDVVPMSYEFNEVVFKELKKILGDKKLQSTPIGRFGMKENVDTYIE
+SVVTGQLEGEFSVAVQTVENDEVILTLPAFVIFRK
+>8cd6db6d-b818-4b65-b6f2-de79844a5641 (mRNA) 314 residues [Merlin:1067-2011 - strand] [peptide] name=Merlin_3_mRNA-00001
+MLTLDEFKNQAGNIDFQRTNMFSCVFATTPSAKSQQLLDQFGGMLFNNLPLNNDWLGLTQ
+GEFTSGLTSIITAGTQQLVRKSGVSKYLIGAMSNRVVQSLLGEFEVGTYLLDFFNMAYPQ
+SGLMIYSVKIPENRLSHEMDFNHNSPNIRITGRELDPLTISFRMDPEASNYRAMQDWVNS
+VQDPVTGLRALPTDVEADIQVNLHARNGLPHTVIMFTGCVPVACGAPELTYEGDNQIAVF
+DVTFAYRVMQTGAVGRQAALDWIEDRAVNSITGINSEMSLNGSLSRLSRLGGAAGGLSHV
+INSTRNSTSKILGL
+>125a44c4-44da-4854-9d3b-ae2aa0221120 (mRNA) 351 residues [Merlin:2011-3066 - strand] [peptide] name=Merlin_4_mRNA-00001
 MSIKVRELDDKTDALISGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLY
 KNGLLFTAYDMNSRTTGDMRSMRLGEMKRTANSVVKSITGTNTNKVDKIPVVNILLPRSK
 SDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTA
 RSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEW
 YKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGP
 CQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF
->c009dd7a-3284-4e7f-9ee1-3b56e2598e07 (mRNA) 553 residues [Merlin:3066-4796 - strand] [peptide] name=multiexongene
+>87414073-7db0-4a60-903f-5e3593e55884 (mRNA) 553 residues [Merlin:3066-4796 - strand] [peptide] name=Merlin_5_mRNA-00001
 MKSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKG
 NNLIDSVDNVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKV
 QESGASASTGLSVIEDKLPDPDEPFFPPVPQEPENNKKDQKKDDKKPTDMLGDLLKTTKG
@@ -25,5 +31,9 @@
 YIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDN
 TPKPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQTVTA
 TPAPGVFGATGVN
->2706ea76-172a-48c1-b940-eb603996f082 (mRNA) 1 residues [Merlin:5011-6066 - strand] [peptide] name=cds-not-under-exon
-L
+>1dcb3fc3-3307-4476-9c8a-04d252f9371f (mRNA) 258 residues [Merlin:5011-6066 - strand] [peptide] name=Merlin_42_mRNA-00001
+FNDAGESIKEMIGAIYESKPLIAPAMNTINTYVPRVPWTSNITEYKKYVRDVALAVDNDQ
+FVFVWEDIYGLNMMDYDAMINQESIKVIVGEPRTIGQFVGELEYNLAYDFQWLTKANAHT
+RDPIFNATIYSHSFLDNNLPRIVTGDGQNSIFVSRSGAYSEMTYRNGYEEAIRLQTMAQY
+DGYATCKMVGDFEMTPGDKINFFDPKKQFKADFYIDEVIHEVSNNQSITTLYMFTNSRKL
+ETVEPIKVKNELKSDTTT