# HG changeset patch
# User gga
# Date 1673437650 0
# Node ID f8d6315223d8ab1b4729fff259e10fb0c49cd506
# Parent  02404029ae4c54709c343c0c24860ca46ab7b96f
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 12282c16658b37858f49944796fd95515ef0fc0b

diff -r 02404029ae4c -r f8d6315223d8 create_or_update_organism.py
--- a/create_or_update_organism.py	Fri Dec 10 09:50:11 2021 +0000
+++ b/create_or_update_organism.py	Wed Jan 11 11:47:30 2023 +0000
@@ -88,7 +88,7 @@
 
     # Cleanup if existing
     if not IsRemote():
-        if(os.path.exists(args.jbrowse)):
+        if os.path.exists(args.jbrowse):
             shutil.rmtree(args.jbrowse)
         # Copy files
         shutil.copytree(args.jbrowse_src, args.jbrowse, symlinks=True)
diff -r 02404029ae4c -r f8d6315223d8 webapollo.py
--- a/webapollo.py	Fri Dec 10 09:50:11 2021 +0000
+++ b/webapollo.py	Wed Jan 11 11:47:30 2023 +0000
@@ -5,9 +5,15 @@
 import json
 import logging
 import os
+import sys
 import time
 from abc import abstractmethod
 
+if sys.version_info.major == 3 and sys.version_info.minor >= 10:
+    from collections.abc import MutableMapping
+else:
+    from collections import MutableMapping
+
 import requests
 
 from six.moves.builtins import next
@@ -29,7 +35,7 @@
 # of https://github.com/tkem/cachetools/    #
 #############################################
 
-class DefaultMapping(collections.MutableMapping):
+class DefaultMapping(MutableMapping):
 
     __slots__ = ()
 
@@ -436,7 +442,6 @@
     def __init__(self):
 
         if 'ARROW_GLOBAL_CONFIG_PATH' in os.environ:
-
             with open(os.environ['ARROW_GLOBAL_CONFIG_PATH'], 'r') as config:
                 conf = yaml.safe_load(config)
                 try: