Mercurial > repos > gga > apollo_export

comparison create_or_update_organism.py @ 17:f6e09a37bc8b draft default tip

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 12282c16658b37858f49944796fd95515ef0fc0b
author gga
date Wed, 11 Jan 2023 11:48:06 +0000
parents 56b9a26694c0
children
comparison
equal deleted inserted replaced
16:c3251541cf2b 17:f6e09a37bc8b
86 86
87 path_fasta = args.jbrowse_src + '/seq/genome.fasta' 87 path_fasta = args.jbrowse_src + '/seq/genome.fasta'
88 88
89 # Cleanup if existing 89 # Cleanup if existing
90 if not IsRemote(): 90 if not IsRemote():
91 if(os.path.exists(args.jbrowse)): 91 if os.path.exists(args.jbrowse):
92 shutil.rmtree(args.jbrowse) 92 shutil.rmtree(args.jbrowse)
93 # Copy files 93 # Copy files
94 shutil.copytree(args.jbrowse_src, args.jbrowse, symlinks=True) 94 shutil.copytree(args.jbrowse_src, args.jbrowse, symlinks=True)
95 95
96 path_2bit = args.jbrowse + '/seq/genome.2bit' 96 path_2bit = args.jbrowse + '/seq/genome.2bit'