Mercurial > repos > gga > apollo_export
diff delete_features.py @ 5:950fb2bf116d draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 85194fa009ead2c34720faab61a4143fc29d17c2
author | gga |
---|---|
date | Fri, 31 Aug 2018 09:33:38 -0400 |
parents | b4a85d0c85b8 |
children | c3b5bc8b4080 |
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--- a/delete_features.py Mon Mar 12 06:31:27 2018 -0400 +++ b/delete_features.py Fri Aug 31 09:33:38 2018 -0400 @@ -5,7 +5,7 @@ import logging import random -from webapollo import AssertUser, GuessOrg, OrgOrGuess, WAAuth, WebApolloInstance, retry +from webapollo import GuessOrg, OrgOrGuess, PermissionCheck, WAAuth, WebApolloInstance, retry logging.basicConfig(level=logging.INFO) log = logging.getLogger(__name__) @@ -21,14 +21,15 @@ wa = WebApolloInstance(args.apollo, args.username, args.password) # User must have an account - gx_user = AssertUser(wa.users.loadUsers(email=args.email)) + gx_user = wa.users.assertOrCreateUser(args.email) # Get organism org_cn = GuessOrg(args, wa) if isinstance(org_cn, list): org_cn = org_cn[0] - # TODO: Check user perms on org. + if not PermissionCheck(gx_user, org_cn, "WRITE"): + raise Exception("Action not permitted") org = wa.organisms.findOrganismByCn(org_cn) sequences = wa.organisms.getSequencesForOrganism(org['id'])