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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
author gga
date Mon, 11 Sep 2017 05:45:37 -0400
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1 Galaxy-apollo
2 =============
3
4 Galaxy tools to interface with Apollo The webapollo.py file is also
5 `separately
6 available <https://github.com/galaxy-genome-annotation/python-apollo>`__
7 as a pip-installable package.
8
9 Environ
10
11 The following environment variables must be set:
12
13 +--------------------------------+-----------------------------------------------------------+
14 | ENV | Use |
15 +================================+===========================================================+
16 | ``$GALAXY_WEBAPOLLO_URL`` | The URL at which Apollo is accessible, internal to Galaxy |
17 | | and where the tools run. Must be absolute, with FQDN and |
18 | | protocol. |
19 +--------------------------------+-----------------------------------------------------------+
20 | ``$GALAXY_WEBAPOLLO_USER`` | The admin user which Galaxy should use to talk to Apollo. |
21 | | |
22 +--------------------------------+-----------------------------------------------------------+
23 | ``$GALAXY_WEBAPOLLO_PASSWORD`` | The password for the admin user. |
24 | | |
25 | | |
26 +--------------------------------+-----------------------------------------------------------+
27 | ``$GALAXY_WEBAPOLLO_EXT_URL`` | users. May be relative or absolute. |
28 | | The external URL at which Apollo is accessible to end |
29 | | |
30 +--------------------------------+-----------------------------------------------------------+
31 | ``$GALAXY_SHARED_DIR`` | Directory shared between Galaxy and Apollo, used to |
32 | | exchange JBrowse instances. |
33 +--------------------------------+-----------------------------------------------------------+
34
35 License
36 -------
37
38 All python scripts, wrappers, and the webapollo.py are licensed under
39 MIT license.