Mercurial > repos > gga > apollo_feat_from_gff3

diff export.py @ 13:bb562d95b6cd draft

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"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 7bf18c69becc57152efdadedf7ebd0bcfa382a15"
author gga
date Mon, 29 Jun 2020 09:17:58 -0400
parents 5d1cf95ade8a
children 12ebb583b8a3
line wrap: on
line diff
--- a/export.py	Fri Apr 24 09:08:24 2020 -0400
+++ b/export.py	Mon Jun 29 09:17:58 2020 -0400
@@ -52,28 +52,28 @@
 
         uuid_gff = wa.io.write_downloadable(org['commonName'], 'GFF3', export_gff3_fasta=True, sequences=seqs)
         if 'error' in uuid_gff or 'uuid' not in uuid_gff:
-            raise Exception("Apollo failed to prepare the file for download: %s" % uuid_gff)
+            raise Exception("Apollo failed to prepare the GFF3 file for download: %s" % uuid_gff)
         args.gff.write(wa.io.download(uuid_gff['uuid'], output_format="text"))
 
         time.sleep(1)
 
         uuid_vcf = wa.io.write_downloadable(org['commonName'], 'VCF', sequences=seqs)
         if 'error' in uuid_vcf or 'uuid' not in uuid_vcf:
-            raise Exception("Apollo failed to prepare the file for download: %s" % uuid_vcf)
+            raise Exception("Apollo failed to prepare the VCF file for download: %s" % uuid_vcf)
         args.vcf.write(wa.io.download(uuid_vcf['uuid'], output_format="text"))
 
         time.sleep(1)
 
         uuid_fa = wa.io.write_downloadable(org['commonName'], 'FASTA', sequences=seqs, seq_type='cdna')
         if 'error' in uuid_fa or 'uuid' not in uuid_fa:
-            raise Exception("Apollo failed to prepare the file for download: %s" % uuid_fa)
+            raise Exception("Apollo failed to prepare the cdna FASTA file for download: %s" % uuid_fa)
         args.fasta_cdna.write(wa.io.download(uuid_fa['uuid'], output_format="text"))
 
         time.sleep(1)
 
         uuid_fa = wa.io.write_downloadable(org['commonName'], 'FASTA', sequences=seqs, seq_type='cds')
         if 'error' in uuid_fa or 'uuid' not in uuid_fa:
-            raise Exception("Apollo failed to prepare the file for download: %s" % uuid_fa)
+            raise Exception("Apollo failed to prepare the cds FASTA file for download: %s" % uuid_fa)
         args.fasta_cds.write(wa.io.download(uuid_fa['uuid'], output_format="text"))
 
         time.sleep(1)