Mercurial > repos > gga > apollo_feat_from_gff3

view test-data/export/pep.fa @ 14:9f9aa5a88972 draft

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"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 7f274d9deece87f6837ffb0a22d9231671be4542"
author gga
date Wed, 19 Aug 2020 06:54:11 -0400
parents bb562d95b6cd
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>df4157db-1481-4120-858c-e6a4c0f78547 (mRNA) 229 residues [Merlin:2-691 + strand] [peptide] name=Merlin_1_mRNA-00001
RLDKGTLLYRGQKLDLPTFEHNAENKLFYFRNYVSTSLKPLIFGEFGRMFMALDDDTTIY
TAETPDDYNRFANPEDIIDIGATQKDSFDDNNNDGTSINIGKQVNLGFVISGAENVRVIV
PGSLTEYPEEAEVILPRGTLLKINKITTQVDKRSNKFMVEGSIVPPSEQIDESVEIYDGD
LFMETGEVVKLSGFMQFVNESAYDEEQNQMAAEILSGFLDIDDMPRKFR
>eedd9b31-f1dd-487c-a3ab-6435b2214685 (mRNA) 95 residues [Merlin:752-1039 + strand] [peptide] name=mrna-name-00001
MKSIFRINGVEIVVEDVVPMSYEFNEVVFKELKKILGDKKLQSTPIGRFGMKENVDTYIE
SVVTGQLEGEFSVAVQTVENDEVILTLPAFVIFRK
>8cd6db6d-b818-4b65-b6f2-de79844a5641 (mRNA) 314 residues [Merlin:1067-2011 - strand] [peptide] name=Merlin_3_mRNA-00001
MLTLDEFKNQAGNIDFQRTNMFSCVFATTPSAKSQQLLDQFGGMLFNNLPLNNDWLGLTQ
GEFTSGLTSIITAGTQQLVRKSGVSKYLIGAMSNRVVQSLLGEFEVGTYLLDFFNMAYPQ
SGLMIYSVKIPENRLSHEMDFNHNSPNIRITGRELDPLTISFRMDPEASNYRAMQDWVNS
VQDPVTGLRALPTDVEADIQVNLHARNGLPHTVIMFTGCVPVACGAPELTYEGDNQIAVF
DVTFAYRVMQTGAVGRQAALDWIEDRAVNSITGINSEMSLNGSLSRLSRLGGAAGGLSHV
INSTRNSTSKILGL
>125a44c4-44da-4854-9d3b-ae2aa0221120 (mRNA) 351 residues [Merlin:2011-3066 - strand] [peptide] name=Merlin_4_mRNA-00001
MSIKVRELDDKTDALISGVKTSAGQSSQSAKIKSTITAQYPSERSAGNDTSGSLRVHDLY
KNGLLFTAYDMNSRTTGDMRSMRLGEMKRTANSVVKSITGTNTNKVDKIPVVNILLPRSK
SDVESVSHKFNDVGDSLISRGGGTATGVLSNVASTAVFGGLESLTQGLMADHNEQIYNTA
RSMYGGADNRTKVFTWDLTPRSVQDLIAIIEIYEYFNYYSYGETGTSTYAKEVKSQLDEW
YKSTFLDTLTPDEANKNDTVFEKITSFLSNVIVVSNPTVWFVRNFGTTSKFDGRAEVFGP
CQIQSIRFDKTPNGNFNGLAIAPNLPSTFTLEITMREILTLNRASVYAEGF
>87414073-7db0-4a60-903f-5e3593e55884 (mRNA) 553 residues [Merlin:3066-4796 - strand] [peptide] name=Merlin_5_mRNA-00001
MKSENMSTMRRRKVIADSKGERDAASTASDQVDSLELIGLKLDDVQSANELVAEVIEEKG
NNLIDSVDNVAEGTELAAEASERTTESIKTLTGVASTISDKLSKLASMLESKVQAVEQKV
QESGASASTGLSVIEDKLPDPDEPFFPPVPQEPENNKKDQKKDDKKPTDMLGDLLKTTKG
GFKATISITDKISSMLFKYTVTALAEAAKMAAMLFALVLGIDLLRIHFKYWTDKFMSNFD
EFSAEAGEWGGLLQSIFGMLGDIKKFWEAGDWSGLAVAIVKGLADVIYNLSEIMSLGISK
ISASILDALGFENAATTIRGSALEGFQERTGNSLSEDDQKALAKYQSKRIEEGPGIIDKA
GEFKTRAFDWVLGRENKIDSTQASDRDQETQNLKAMAPEKREETLIKQNEARAAVQRLEK
YIGDVDPENPTNMQSLEKAYNSAKKSISDSAISDQPATKKELDKRFQRVESKYQKLKEDN
TPKPAAPATSEDNQRVQNIQKAENAKEQSKKSTGDMNVANTQVNNVNNSKTIHQVQTVTA
TPAPGVFGATGVN
>1dcb3fc3-3307-4476-9c8a-04d252f9371f (mRNA) 258 residues [Merlin:5011-6066 - strand] [peptide] name=Merlin_42_mRNA-00001
FNDAGESIKEMIGAIYESKPLIAPAMNTINTYVPRVPWTSNITEYKKYVRDVALAVDNDQ
FVFVWEDIYGLNMMDYDAMINQESIKVIVGEPRTIGQFVGELEYNLAYDFQWLTKANAHT
RDPIFNATIYSHSFLDNNLPRIVTGDGQNSIFVSRSGAYSEMTYRNGYEEAIRLQTMAQY
DGYATCKMVGDFEMTPGDKINFFDPKKQFKADFYIDEVIHEVSNNQSITTLYMFTNSRKL
ETVEPIKVKNELKSDTTT