annotate json2iframe.xml @ 5:207c1c281360 draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 85194fa009ead2c34720faab61a4143fc29d17c2
author gga
date Fri, 31 Aug 2018 09:33:49 -0400
parents a10003dc6c85
children 466f03bef714
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99b348a1d355 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
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1 <?xml version="1.0"?>
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2 <tool id="iframe" name="Annotate" version="3.1">
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3 <description>opens an IFrame to Apollo</description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
99b348a1d355 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
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7 <expand macro="requirements"/>
99b348a1d355 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
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8 <command detect_errors="aggressive"><![CDATA[
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9 python $__tool_directory__/json2iframe.py
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10 @URL@
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11 '$json_file'
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12 @EXT_URL@
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13 > $output]]></command>
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14 <inputs>
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15 <param name="json_file" type="data" format="json" label="Apollo Organism Listing" />
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16 </inputs>
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17 <outputs>
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18 <data format="html" name="output"/>
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19 </outputs>
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20 <tests>
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21 <test>
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22 <param name="json_file" value="fake.json"/>
99b348a1d355 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
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23 <output name="html">
99b348a1d355 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
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24 <assert_contents>
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25 <has_text text="Embedded Apollo Access" />
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26 </assert_contents>
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27 </output>
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28 </test>
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29 </tests>
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30 <help><![CDATA[
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31 **What it does**
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32
99b348a1d355 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
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33 Given a json file that's output by the Galaxy<->Apollo bridge, this
99b348a1d355 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
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34 generates a nice little IFrame that you can use to access Apollo
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35
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36 @REFERENCES@
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37 ]]></help>
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38 <expand macro="citations"/>
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39 </tool>