Mercurial > repos > gga > apollo_iframe
comparison create_or_update_organism.py @ 8:860ca63f4a59 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 2488ac4ea447c45886ce5c7b102fb28c5839d26b
author | gga |
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date | Wed, 10 Apr 2019 13:58:21 -0400 |
parents | 9305e1881519 |
children | c6172b538caf |
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7:9305e1881519 | 8:860ca63f4a59 |
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45 | 45 |
46 # Cleanup if existing | 46 # Cleanup if existing |
47 if(os.path.exists(args.jbrowse)): | 47 if(os.path.exists(args.jbrowse)): |
48 shutil.rmtree(args.jbrowse) | 48 shutil.rmtree(args.jbrowse) |
49 # Copy files | 49 # Copy files |
50 shutil.copytree(args.jbrowse_src, args.jbrowse) | 50 shutil.copytree(args.jbrowse_src, args.jbrowse, symlinks=True) |
51 | 51 |
52 path_fasta = args.jbrowse + '/seq/genome.fasta' | 52 path_fasta = args.jbrowse + '/seq/genome.fasta' |
53 path_2bit = args.jbrowse + '/seq/genome.2bit' | 53 path_2bit = args.jbrowse + '/seq/genome.2bit' |
54 | 54 |
55 # Convert fasta if existing | 55 # Convert fasta if existing |