Mercurial > repos > gga > apollo_iframe
comparison json2iframe.xml @ 0:99b348a1d355 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
| author | gga |
|---|---|
| date | Mon, 11 Sep 2017 05:47:45 -0400 |
| parents | |
| children | a10003dc6c85 |
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| -1:000000000000 | 0:99b348a1d355 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool id="iframe" name="Annotate" version="3.0"> | |
| 3 <description>opens an IFrame to Apollo</description> | |
| 4 <macros> | |
| 5 <import>macros.xml</import> | |
| 6 </macros> | |
| 7 <expand macro="requirements"/> | |
| 8 <command detect_errors="aggressive"><![CDATA[ | |
| 9 python $__tool_directory__/json2iframe.py | |
| 10 @URL@ | |
| 11 '$json_file' | |
| 12 @EXT_URL@ | |
| 13 > $output]]></command> | |
| 14 <inputs> | |
| 15 <param name="json_file" type="data" format="json" label="Apollo Organism Listing" /> | |
| 16 </inputs> | |
| 17 <outputs> | |
| 18 <data format="html" name="output"/> | |
| 19 </outputs> | |
| 20 <tests> | |
| 21 <test> | |
| 22 <param name="json_file" value="fake.json"/> | |
| 23 <output name="html"> | |
| 24 <assert_contents> | |
| 25 <has_text text="Embedded Apollo Access" /> | |
| 26 </assert_contents> | |
| 27 </output> | |
| 28 </test> | |
| 29 </tests> | |
| 30 <help><![CDATA[ | |
| 31 **What it does** | |
| 32 | |
| 33 Given a json file that's output by the Galaxy<->Apollo bridge, this | |
| 34 generates a nice little IFrame that you can use to access Apollo | |
| 35 | |
| 36 @REFERENCES@ | |
| 37 ]]></help> | |
| 38 <expand macro="citations"/> | |
| 39 </tool> |