Mercurial > repos > gga > apollo_iframe

comparison json2iframe.xml @ 9:b0714ffcf142 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 49fe23e3fb330234900946352fbc3a86deeeb639
author gga
date Mon, 29 Jul 2019 10:08:38 -0400
parents 466f03bef714
children c6172b538caf
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8:860ca63f4a59 9:b0714ffcf142
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="iframe" name="Annotate" version="3.1"> 2 <tool id="iframe" name="Annotate" version="@WRAPPER_VERSION@">
3 <description>opens an IFrame to Apollo</description> 3 <description>opens an IFrame to Apollo</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <command detect_errors="aggressive"><![CDATA[ 8 <command detect_errors="aggressive"><![CDATA[
9 python $__tool_directory__/json2iframe.py 9 python $__tool_directory__/json2iframe.py
10 @URL@ 10 @URL@
11 '$json_file' 11 '$json_file'
12 @EXT_URL@ 12 @EXT_URL@
13 $tracklist
13 > $output]]></command> 14 > $output]]></command>
14 <inputs> 15 <inputs>
15 <param name="json_file" type="data" format="json" label="Apollo Organism Listing" /> 16 <param name="json_file" type="data" format="json" label="Apollo Organism Listing" />
17 <param name="tracklist" type="boolean" truevalue="--tracklist" falsevalue="" label="Force the tracklist on in JBrowse"/>
18
16 </inputs> 19 </inputs>
17 <outputs> 20 <outputs>
18 <data format="html" name="output"/> 21 <data format="html" name="output"/>
19 </outputs> 22 </outputs>
20 <tests> 23 <tests>