Mercurial > repos > gga > apollo_iframe
comparison test-data/dataset_1_files/data/trackList.json @ 10:c6172b538caf draft
"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 08015be1ee8a784e0619f961aaa724857debfd6f"
author | gga |
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date | Mon, 02 Dec 2019 05:42:52 -0500 |
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9:b0714ffcf142 | 10:c6172b538caf |
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1 { | |
2 "formatVersion" : 1, | |
3 "hideGenomeOptions" : false, | |
4 "names" : { | |
5 "type" : "Hash", | |
6 "url" : "names/" | |
7 }, | |
8 "plugins" : [ | |
9 { | |
10 "location" : "https://cdn.jsdelivr.net/gh/TAMU-CPT/blastview@97572a21b7f011c2b4d9a0b5af40e292d694cbef/", | |
11 "name" : "BlastView" | |
12 } | |
13 ], | |
14 "refSeqs" : "seq/genome.fasta.fai", | |
15 "shareLink" : true, | |
16 "show_menu" : true, | |
17 "show_nav" : true, | |
18 "show_overview" : true, | |
19 "show_tracklist" : true, | |
20 "tracks" : [ | |
21 { | |
22 "category" : "Reference sequence", | |
23 "codonStarts" : [ | |
24 "TTG", | |
25 "CTG", | |
26 "ATG" | |
27 ], | |
28 "codonStops" : [ | |
29 "TAA", | |
30 "TAG", | |
31 "TGA" | |
32 ], | |
33 "codonTable" : { | |
34 "AAA" : "K", | |
35 "AAC" : "N", | |
36 "AAG" : "K", | |
37 "AAT" : "N", | |
38 "ACA" : "T", | |
39 "ACC" : "T", | |
40 "ACG" : "T", | |
41 "ACT" : "T", | |
42 "AGA" : "R", | |
43 "AGC" : "S", | |
44 "AGG" : "R", | |
45 "AGT" : "S", | |
46 "ATA" : "I", | |
47 "ATC" : "I", | |
48 "ATG" : "M", | |
49 "ATT" : "I", | |
50 "CAA" : "Q", | |
51 "CAC" : "H", | |
52 "CAG" : "Q", | |
53 "CAT" : "H", | |
54 "CCA" : "P", | |
55 "CCC" : "P", | |
56 "CCG" : "P", | |
57 "CCT" : "P", | |
58 "CGA" : "R", | |
59 "CGC" : "R", | |
60 "CGG" : "R", | |
61 "CGT" : "R", | |
62 "CTA" : "L", | |
63 "CTC" : "L", | |
64 "CTG" : "L", | |
65 "CTT" : "L", | |
66 "GAA" : "E", | |
67 "GAC" : "D", | |
68 "GAG" : "E", | |
69 "GAT" : "D", | |
70 "GCA" : "A", | |
71 "GCC" : "A", | |
72 "GCG" : "A", | |
73 "GCT" : "A", | |
74 "GGA" : "G", | |
75 "GGC" : "G", | |
76 "GGG" : "G", | |
77 "GGT" : "G", | |
78 "GTA" : "V", | |
79 "GTC" : "V", | |
80 "GTG" : "V", | |
81 "GTT" : "V", | |
82 "TAC" : "Y", | |
83 "TAT" : "Y", | |
84 "TCA" : "S", | |
85 "TCC" : "S", | |
86 "TCG" : "S", | |
87 "TCT" : "S", | |
88 "TGC" : "C", | |
89 "TGG" : "W", | |
90 "TGT" : "C", | |
91 "TTA" : "L", | |
92 "TTC" : "F", | |
93 "TTG" : "L", | |
94 "TTT" : "F" | |
95 }, | |
96 "faiUrlTemplate" : "seq/genome.fasta.fai", | |
97 "key" : "Reference sequence", | |
98 "label" : "DNA", | |
99 "metadata" : { | |
100 "dataset_edam_format" : "<a target=\"_blank\" href=\"http://edamontology.org/format_1929\">fasta</a>", | |
101 "dataset_file_ext" : "fasta", | |
102 "dataset_hid" : "1", | |
103 "dataset_id" : "7495a4247e72f5f1", | |
104 "dataset_size" : "171.6 KB", | |
105 "history_display_name" : "<a target=\"_blank\" href=\"http://localhost/history/view/d29e465b351a50c9\">Unnamed history</a>", | |
106 "history_id" : "d29e465b351a50c9", | |
107 "history_user_email" : "<a href=\"mailto:anthony.bretaudeau@irisa.fr\">anthony.bretaudeau@irisa.fr</a>", | |
108 "history_user_id" : "17", | |
109 "metadata_data_lines" : "2881", | |
110 "metadata_dbkey" : "?", | |
111 "metadata_sequences" : "1", | |
112 "tool_tool" : "<a target=\"_blank\" href=\"http://localhost/datasets/7495a4247e72f5f1/show_params\">upload1</a>", | |
113 "tool_tool_id" : "upload1", | |
114 "tool_tool_version" : "1.1.6" | |
115 }, | |
116 "seqType" : "dna", | |
117 "storeClass" : "JBrowse/Store/SeqFeature/IndexedFasta", | |
118 "type" : "SequenceTrack", | |
119 "urlTemplate" : "seq/genome.fasta", | |
120 "useAsRefSeqStore" : 1 | |
121 }, | |
122 { | |
123 "category" : "Default", | |
124 "key" : "merlin.gff", | |
125 "label" : "4ced49b280a72a29f1b922ae1a9664c8_0", | |
126 "maxHeight" : "600", | |
127 "menuTemplate" : [ | |
128 {}, | |
129 {}, | |
130 {}, | |
131 {} | |
132 ], | |
133 "metadata" : { | |
134 "dataset_edam_format" : "<a target=\"_blank\" href=\"http://edamontology.org/format_1975\">gff3</a>", | |
135 "dataset_file_ext" : "gff3", | |
136 "dataset_hid" : "2", | |
137 "dataset_id" : "b02ee2031011d9cf", | |
138 "dataset_size" : "110.3 KB", | |
139 "history_display_name" : "<a target=\"_blank\" href=\"http://localhost/history/view/d29e465b351a50c9\">Unnamed history</a>", | |
140 "history_id" : "d29e465b351a50c9", | |
141 "history_user_email" : "<a href=\"mailto:anthony.bretaudeau@irisa.fr\">anthony.bretaudeau@irisa.fr</a>", | |
142 "history_user_id" : "17", | |
143 "metadata_attributes" : "4", | |
144 "metadata_columns" : "9", | |
145 "metadata_comment_lines" : "2", | |
146 "metadata_data_lines" : "1228", | |
147 "metadata_dbkey" : "?", | |
148 "metadata_delimiter" : "__tc__", | |
149 "tool_tool" : "<a target=\"_blank\" href=\"http://localhost/datasets/b02ee2031011d9cf/show_params\">upload1</a>", | |
150 "tool_tool_id" : "upload1", | |
151 "tool_tool_version" : "1.1.6" | |
152 }, | |
153 "overrideDraggable" : false, | |
154 "overridePlugins" : false, | |
155 "storeClass" : "JBrowse/Store/SeqFeature/GFF3Tabix", | |
156 "style" : { | |
157 "className" : "feature", | |
158 "color" : "#a6cee3", | |
159 "description" : "note,description", | |
160 "label" : "product,name,id" | |
161 }, | |
162 "trackType" : "NeatHTMLFeatures/View/Track/NeatFeatures", | |
163 "type" : "NeatHTMLFeatures/View/Track/NeatFeatures", | |
164 "urlTemplate" : "raw/4ced49b280a72a29f1b922ae1a9664c8_0.gff.gz" | |
165 } | |
166 ], | |
167 "view" : { | |
168 "trackPadding" : 20 | |
169 } | |
170 } |