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diff README.rst @ 0:1f2e360f7554 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
author gga
date Mon, 11 Sep 2017 05:48:05 -0400
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+++ b/README.rst	Mon Sep 11 05:48:05 2017 -0400
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+Galaxy-apollo
+=============
+
+Galaxy tools to interface with Apollo The webapollo.py file is also
+`separately
+available <https://github.com/galaxy-genome-annotation/python-apollo>`__
+as a pip-installable package.
+
+Environ
+
+The following environment variables must be set:
+
++--------------------------------+-----------------------------------------------------------+
+| ENV                            | Use                                                       |
++================================+===========================================================+
+| ``$GALAXY_WEBAPOLLO_URL``      | The URL at which Apollo is accessible, internal to Galaxy |
+|                                | and where the tools run. Must be absolute, with FQDN and  |
+|                                | protocol.                                                 |
++--------------------------------+-----------------------------------------------------------+
+| ``$GALAXY_WEBAPOLLO_USER``     | The admin user which Galaxy should use to talk to Apollo. |
+|                                |                                                           |
++--------------------------------+-----------------------------------------------------------+
+| ``$GALAXY_WEBAPOLLO_PASSWORD`` | The password for the admin user.                          |
+|                                |                                                           |
+|                                |                                                           |
++--------------------------------+-----------------------------------------------------------+
+| ``$GALAXY_WEBAPOLLO_EXT_URL``  | users. May be relative or absolute.                       |
+|                                | The external URL at which Apollo is accessible to end     |
+|                                |                                                           |
++--------------------------------+-----------------------------------------------------------+
+| ``$GALAXY_SHARED_DIR``         | Directory shared between Galaxy and Apollo, used to       |
+|                                | exchange JBrowse instances.                               |
++--------------------------------+-----------------------------------------------------------+
+
+License
+-------
+
+All python scripts, wrappers, and the webapollo.py are licensed under
+MIT license.