Mercurial > repos > gga > apollo_list_organism

diff list_organisms.py @ 5:a3000d01c04c draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 85194fa009ead2c34720faab61a4143fc29d17c2
author gga
date Fri, 31 Aug 2018 09:34:31 -0400
parents 1f2e360f7554
children bc2b80fc7e30
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line diff
--- a/list_organisms.py	Mon Mar 12 06:32:56 2018 -0400
+++ b/list_organisms.py	Fri Aug 31 09:34:31 2018 -0400
@@ -4,7 +4,7 @@
 import argparse
 import json
 
-from webapollo import AssertUser, WAAuth, WebApolloInstance, accessible_organisms
+from webapollo import WAAuth, WebApolloInstance, accessible_organisms
 
 if __name__ == '__main__':
     parser = argparse.ArgumentParser(description='List all organisms available in an Apollo instance')
@@ -14,7 +14,8 @@
 
     wa = WebApolloInstance(args.apollo, args.username, args.password)
 
-    gx_user = AssertUser(wa.users.loadUsers(email=args.email))
+    gx_user = wa.users.assertOrCreateUser(args.email)
+
     all_orgs = wa.organisms.findAllOrganisms()
 
     orgs = accessible_organisms(gx_user, all_orgs)