Mercurial > repos > gga > apollo_list_organism

changeset 17:8dc690130172 draft default tip

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 12282c16658b37858f49944796fd95515ef0fc0b
author gga
date Wed, 11 Jan 2023 11:48:41 +0000
parents 78abc724d792
children
files create_or_update_organism.py webapollo.py
diffstat 2 files changed, 8 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/create_or_update_organism.py	Fri Dec 10 09:53:05 2021 +0000
+++ b/create_or_update_organism.py	Wed Jan 11 11:48:41 2023 +0000
@@ -88,7 +88,7 @@
 
     # Cleanup if existing
     if not IsRemote():
-        if(os.path.exists(args.jbrowse)):
+        if os.path.exists(args.jbrowse):
             shutil.rmtree(args.jbrowse)
         # Copy files
         shutil.copytree(args.jbrowse_src, args.jbrowse, symlinks=True)
--- a/webapollo.py	Fri Dec 10 09:53:05 2021 +0000
+++ b/webapollo.py	Wed Jan 11 11:48:41 2023 +0000
@@ -5,9 +5,15 @@
 import json
 import logging
 import os
+import sys
 import time
 from abc import abstractmethod
 
+if sys.version_info.major == 3 and sys.version_info.minor >= 10:
+    from collections.abc import MutableMapping
+else:
+    from collections import MutableMapping
+
 import requests
 
 from six.moves.builtins import next
@@ -29,7 +35,7 @@
 # of https://github.com/tkem/cachetools/    #
 #############################################
 
-class DefaultMapping(collections.MutableMapping):
+class DefaultMapping(MutableMapping):
 
     __slots__ = ()
 
@@ -436,7 +442,6 @@
     def __init__(self):
 
         if 'ARROW_GLOBAL_CONFIG_PATH' in os.environ:
-
             with open(os.environ['ARROW_GLOBAL_CONFIG_PATH'], 'r') as config:
                 conf = yaml.safe_load(config)
                 try: