Mercurial > repos > gga > chado_analysis_add_analysis

comparison analysis_add_analysis.xml @ 10:21de6e516f97 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
author gga
date Mon, 08 Jul 2019 05:39:24 -0400
parents 11b434f48a03
children a2efb5aff729
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9:11b434f48a03 10:21de6e516f97
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="analysis_add_analysis" name="Chado analysis add" version="@WRAPPER_VERSION@.0"> 2 <tool id="analysis_add_analysis" name="Chado analysis add" version="@WRAPPER_VERSION@.1">
3 <description></description> 3 <description></description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <command detect_errors="aggressive"><![CDATA[ 8 <command detect_errors="aggressive"><![CDATA[
9 @AUTH@ 9 @START_PSQL@ &&
10 10
11 chakin analysis add_analysis 11 chakin analysis add_analysis
12 '$name' 12 '$name'
13 '$program' 13 '$program'
14 '$programversion' 14 '$programversion'
29 #if $date_executed: 29 #if $date_executed:
30 --date_executed '$date_executed' 30 --date_executed '$date_executed'
31 #end if 31 #end if
32 32
33 | jq -S . > '$results' 33 | jq -S . > '$results'
34
35 && @ZIP_PSQL@
34 ]]></command> 36 ]]></command>
35 <inputs> 37 <inputs>
38 <expand macro="psql_target"/>
36 <!-- arguments --> 39 <!-- arguments -->
37 <param name="name" label="Name" argument="name" type="text" help="analysis name" /> 40 <param name="name" label="Name" argument="name" type="text" help="analysis name" />
38 <param name="program" label="Program" argument="program" type="text" help="analysis program" /> 41 <param name="program" label="Program" argument="program" type="text" help="analysis program" />
39 <param name="programversion" label="Programversion" argument="programversion" type="text" help="analysis programversion" /> 42 <param name="programversion" label="Programversion" argument="programversion" type="text" help="analysis programversion" />
40 <param name="sourcename" label="Sourcename" argument="sourcename" type="text" help="analysis sourcename" /> 43 <param name="sourcename" label="Sourcename" argument="sourcename" type="text" help="analysis sourcename" />
48 <validator type="regex" message="Date in YYYY-MM-DD format">^[0-9]{4}-[0-9]{2}-[0-9]{2}$</validator> 51 <validator type="regex" message="Date in YYYY-MM-DD format">^[0-9]{4}-[0-9]{2}-[0-9]{2}$</validator>
49 </param> 52 </param>
50 53
51 </inputs> 54 </inputs>
52 <outputs> 55 <outputs>
53 <data format="json" name="results"/> 56 <data format="json" name="results" label="Chado analysis add: ${name}"/>
57 <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} '${name}' on ${on_string}">
58 <filter>psql_target['method'] == "pgtools"</filter>
59 </data>
54 </outputs> 60 </outputs>
55 <help> 61 <help>
56 Create an analysis 62 Create an analysis
57 63
58 @HELP@ 64 @HELP@