Mercurial > repos > gga > chado_analysis_add_analysis
diff analysis_add_analysis.xml @ 0:faa1a435c1c0 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
| author | gga |
|---|---|
| date | Thu, 21 Jun 2018 08:46:28 -0400 |
| parents | |
| children | 72cabf21ce8d |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/analysis_add_analysis.xml Thu Jun 21 08:46:28 2018 -0400 @@ -0,0 +1,60 @@ +<?xml version="1.0"?> +<tool id="analysis_add_analysis" name="Chado analysis add" version="@WRAPPER_VERSION@.0"> + <description></description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <command detect_errors="aggressive"><![CDATA[ +@AUTH@ + +chakin analysis add_analysis +'$name' +'$program' +'$programversion' +'$sourcename' + +#if $algorithm: + --algorithm '$algorithm' +#end if +#if $sourceversion: + --sourceversion '$sourceversion' +#end if +#if $sourceuri: + --sourceuri '$sourceuri' +#end if +#if $description: + --description '$description' +#end if +#if $date_executed: + --date_executed '$date_executed' +#end if + +| jq -S . > $results + ]]></command> + <inputs> + <!-- arguments --> + <param name="name" label="Name" argument="name" type="text" help="analysis name" /> + <param name="program" label="Program" argument="program" type="text" help="analysis program" /> + <param name="programversion" label="Programversion" argument="programversion" type="text" help="analysis programversion" /> + <param name="sourcename" label="Sourcename" argument="sourcename" type="text" help="analysis sourcename" /> + + <!-- options --> + <param name="algorithm" label="Algorithm" argument="algorithm" type="text" help="analysis algorithm" optional="True" /> + <param name="sourceversion" label="Sourceversion" argument="sourceversion" type="text" help="analysis sourceversion" optional="True" /> + <param name="sourceuri" label="Sourceuri" argument="sourceuri" type="text" help="analysis sourceuri" optional="True" /> + <param name="description" label="Description" argument="description" type="text" help="analysis description" optional="True" /> + <param name="date_executed" label="Date Executed" argument="date_executed" type="text" optional="True" help="analysis date_executed (yyyy-mm-dd)"> + <validator type="regex" message="Date in YYYY-MM-DD format">^[0-9]{4}-[0-9]{2}-[0-9]{2}$</validator> + </param> + + </inputs> + <outputs> + <data format="json" name="results"/> + </outputs> + <help> +Create an analysis + +@HELP@ + </help> +</tool>