Mercurial > repos > gga > chado_analysis_add_analysis
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"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 73142be24a0462a3aeb303401e8fcbc72f1cd4f5"
author | gga |
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date | Mon, 14 Mar 2022 14:52:07 +0000 |
parents | faa1a435c1c0 |
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Galaxy-chado ============= Galaxy tools to interface with Tripal using python-chado Dependencies ------------ You will need to install some python modules in the Galaxy virtualenv for these tools to be fully functional: .. code:: bash . /path/to/galaxy/.venv/bin/activate pip install future chado deactivate Environment ----------- The following environment variables must be set: +--------------------------------+-----------------------------------------------------------+ | ENV | Use | +================================+===========================================================+ | ``$GALAXY_CHADO_DBHOST`` | Host of the Chado database | +--------------------------------+-----------------------------------------------------------+ | ``$GALAXY_CHADO_DBNAME`` | Name of the Chado database | +--------------------------------+-----------------------------------------------------------+ | ``$GALAXY_CHADO_DBUSER`` | Username to connect to the database | +--------------------------------+-----------------------------------------------------------+ | ``$GALAXY_CHADO_DBPASS`` | Password to connect to the database | +--------------------------------+-----------------------------------------------------------+ | ``$GALAXY_CHADO_DBSCHEMA`` | Database schema. | +--------------------------------+-----------------------------------------------------------+ | ``$GALAXY_CHADO_DBPORT`` | Port of the Chado database | +--------------------------------+-----------------------------------------------------------+ License ------- All python scripts and wrappers are licensed under MIT license.