Mercurial > repos > gga > chado_analysis_add_analysis
view analysis_add_analysis.xml @ 18:cf41c6ff1e93 draft
"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 170209d14cabe6ce8ab7b9f06df7fbf36af2ba43"
author | gga |
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date | Tue, 04 May 2021 12:51:30 +0000 |
parents | 01c6ed95a0e1 |
children |
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<?xml version="1.0"?> <tool id="analysis_add_analysis" name="Chado analysis add" version="@WRAPPER_VERSION@"> <description></description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <command detect_errors="aggressive"><![CDATA[ @START_PSQL@ && chakin analysis add_analysis '$name' '$program' '$programversion' '$sourcename' #if $algorithm: --algorithm '$algorithm' #end if #if $sourceversion: --sourceversion '$sourceversion' #end if #if $sourceuri: --sourceuri '$sourceuri' #end if #if $description: --description '$description' #end if #if $date_executed: --date_executed '$date_executed' #end if | jq -S . > '$results' @ZIP_PSQL@ ]]></command> <inputs> <expand macro="psql_target"/> <!-- arguments --> <param name="name" label="Name" argument="name" type="text" help="analysis name" /> <param name="program" label="Program" argument="program" type="text" help="analysis program" /> <param name="programversion" label="Programversion" argument="programversion" type="text" help="analysis programversion" /> <param name="sourcename" label="Sourcename" argument="sourcename" type="text" help="analysis sourcename" /> <!-- options --> <param name="algorithm" label="Algorithm" argument="--algorithm" type="text" help="analysis algorithm" optional="True" /> <param name="sourceversion" label="Sourceversion" argument="--sourceversion" type="text" help="analysis sourceversion" optional="True" /> <param name="sourceuri" label="Sourceuri" argument="--sourceuri" type="text" help="analysis sourceuri" optional="True" /> <param name="description" label="Description" argument="--description" type="text" help="analysis description" optional="True" /> <param name="date_executed" label="Date Executed" argument="--date_executed" type="text" optional="True" help="analysis date_executed (yyyy-mm-dd)"> <validator type="regex" message="Date in YYYY-MM-DD format">^[0-9]{4}-[0-9]{2}-[0-9]{2}$</validator> </param> </inputs> <outputs> <data format="json" name="results" label="Chado analysis add: ${name}"/> <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} '${name}' on ${on_string}"> <filter>psql_target['method'] == "pgtools"</filter> </data> </outputs> <help> Create an analysis @HELP@ </help> </tool>