Mercurial > repos > gga > chado_analysis_get_analyses

annotate analysis_get_analyses.xml @ 17:8603c83ecaf0 draft

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"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit de446b2959e55879a26948411adf6a22f1e3af3f"
author gga
date Fri, 30 Apr 2021 12:08:23 +0000
parents 461d4d572db0
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1 <?xml version="1.0"?>
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2 <tool id="analysis_get_analyses" name="Chado analysis get" version="@WRAPPER_VERSION@">
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3 <description></description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
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8 <command detect_errors="aggressive"><![CDATA[
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9 @START_PSQL@ &&
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11 chakin analysis get_analyses
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13 #if $analysis_id:
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14 --analysis_id '$analysis_id'
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15 #end if
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16 #if $name:
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17 --name '$name'
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18 #end if
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19 #if $program:
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20 --program '$program'
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21 #end if
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22 #if $programversion:
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23 --programversion '$programversion'
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24 #end if
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25 #if $algorithm:
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26 --algorithm '$algorithm'
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27 #end if
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28 #if $sourcename:
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29 --sourcename '$sourcename'
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30 #end if
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31 #if $sourceversion:
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32 --sourceversion '$sourceversion'
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33 #end if
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34 #if $sourceuri:
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35 --sourceuri '$sourceuri'
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36 #end if
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37 #if $description:
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38 --description '$description'
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39 #end if
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40
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41 | jq -S . > '$results'
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43 @STOP_PSQL@
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44 ]]></command>
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45 <inputs>
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46 <expand macro="psql_target"/>
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47 <!-- options -->
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48 <param name="analysis_id" label="Analysis Id" argument="--analysis_id" type="integer" help="analysis_id filter" optional="True" />
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49 <param name="name" label="Name" argument="--name" type="text" help="analysis name filter" optional="True" />
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50 <param name="program" label="Program" argument="--program" type="text" help="analysis program filter" optional="True" />
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51 <param name="programversion" label="Programversion" argument="--programversion" type="text" help="analysis programversion filter" optional="True" />
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52 <param name="algorithm" label="Algorithm" argument="--algorithm" type="text" help="analysis algorithm filter" optional="True" />
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53 <param name="sourcename" label="Sourcename" argument="--sourcename" type="text" help="analysis sourcename filter" optional="True" />
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54 <param name="sourceversion" label="Sourceversion" argument="--sourceversion" type="text" help="analysis sourceversion filter" optional="True" />
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55 <param name="sourceuri" label="Sourceuri" argument="--sourceuri" type="text" help="analysis sourceuri filter" optional="True" />
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56 <param name="description" label="Description" argument="--description" type="text" help="analysis description" optional="True" />
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57
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58 </inputs>
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59 <outputs>
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60 <data format="json" name="results"/>
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61 </outputs>
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62 <help>
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63 Get all or some analyses
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64
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65 @HELP@
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66 </help>
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67 </tool>