Mercurial > repos > gga > chado_analysis_get_analyses
comparison analysis_get_analyses.xml @ 0:693fd0ba9cf2 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
| author | gga |
|---|---|
| date | Thu, 21 Jun 2018 08:42:59 -0400 |
| parents | |
| children | 304b8f21bb97 |
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| -1:000000000000 | 0:693fd0ba9cf2 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool id="analysis_get_analyses" name="Chado analysis get" version="@WRAPPER_VERSION@.0"> | |
| 3 <description></description> | |
| 4 <macros> | |
| 5 <import>macros.xml</import> | |
| 6 </macros> | |
| 7 <expand macro="requirements"/> | |
| 8 <command detect_errors="aggressive"><![CDATA[ | |
| 9 @AUTH@ | |
| 10 | |
| 11 chakin analysis get_analyses | |
| 12 | |
| 13 #if $analysis_id: | |
| 14 --analysis_id '$analysis_id' | |
| 15 #end if | |
| 16 #if $name: | |
| 17 --name '$name' | |
| 18 #end if | |
| 19 #if $program: | |
| 20 --program '$program' | |
| 21 #end if | |
| 22 #if $programversion: | |
| 23 --programversion '$programversion' | |
| 24 #end if | |
| 25 #if $algorithm: | |
| 26 --algorithm '$algorithm' | |
| 27 #end if | |
| 28 #if $sourcename: | |
| 29 --sourcename '$sourcename' | |
| 30 #end if | |
| 31 #if $sourceversion: | |
| 32 --sourceversion '$sourceversion' | |
| 33 #end if | |
| 34 #if $sourceuri: | |
| 35 --sourceuri '$sourceuri' | |
| 36 #end if | |
| 37 #if $description: | |
| 38 --description '$description' | |
| 39 #end if | |
| 40 | |
| 41 | jq -S . > $results | |
| 42 ]]></command> | |
| 43 <inputs> | |
| 44 <!-- arguments --> | |
| 45 | |
| 46 <!-- options --> | |
| 47 <param name="analysis_id" label="Analysis Id" argument="analysis_id" type="integer" help="analysis_id filter" optional="True" /> | |
| 48 <param name="name" label="Name" argument="name" type="text" help="analysis name filter" optional="True" /> | |
| 49 <param name="program" label="Program" argument="program" type="text" help="analysis program filter" optional="True" /> | |
| 50 <param name="programversion" label="Programversion" argument="programversion" type="text" help="analysis programversion filter" optional="True" /> | |
| 51 <param name="algorithm" label="Algorithm" argument="algorithm" type="text" help="analysis algorithm filter" optional="True" /> | |
| 52 <param name="sourcename" label="Sourcename" argument="sourcename" type="text" help="analysis sourcename filter" optional="True" /> | |
| 53 <param name="sourceversion" label="Sourceversion" argument="sourceversion" type="text" help="analysis sourceversion filter" optional="True" /> | |
| 54 <param name="sourceuri" label="Sourceuri" argument="sourceuri" type="text" help="analysis sourceuri filter" optional="True" /> | |
| 55 <param name="description" label="Description" argument="description" type="text" help="analysis description" optional="True" /> | |
| 56 | |
| 57 </inputs> | |
| 58 <outputs> | |
| 59 <data format="json" name="results"/> | |
| 60 </outputs> | |
| 61 <help> | |
| 62 Get all or some analyses | |
| 63 | |
| 64 @HELP@ | |
| 65 </help> | |
| 66 </tool> |