Mercurial > repos > gga > chado_export_export_fasta

comparison export_export_fasta.xml @ 7:2875b454d1c2 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
author gga
date Fri, 23 Nov 2018 10:59:43 -0500
parents 5f69e36413a4
children 65b10109e3fe
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6:f7d783fd181f 7:2875b454d1c2
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="export_export_fasta" name="Chado export fasta" version="@WRAPPER_VERSION@.0"> 2 <tool id="export_export_fasta" name="Chado export fasta" version="@WRAPPER_VERSION@.0">
3 <description></description> 3 <description></description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <code file="chado.py"/> 8 <code file="chado.py"/>
9 <command detect_errors="aggressive"><![CDATA[ 9 <command detect_errors="aggressive"><![CDATA[
10 @AUTH@ 10 @AUTH@
11 11
12 chakin export export_fasta 12 chakin export export_fasta
13 '$organism' 13 '$organism'
14 14
15 > $results 15 > $results
16 ]]></command> 16 ]]></command>
17 <inputs> 17 <inputs>
18 <!-- arguments --> 18 <!-- arguments -->
19 <param argument="--organism" 19 <param argument="--organism" type="select" dynamic_options="list_organisms()" label="Organism" />
20 type="select" 20 <expand macro="wait_for"/>
21 dynamic_options="list_organisms()"
22 label="Organism" />
23 <expand macro="wait_for"/>
24 21
25 </inputs> 22 </inputs>
26 <outputs> 23 <outputs>
27 <data format="fasta" name="results"/> 24 <data format="fasta" name="results"/>
28 </outputs> 25 </outputs>
29 <help> 26 <help>
30 Export reference sequences as fasta. 27 Export reference sequences as fasta.
31 28
32 @HELP@ 29 @HELP@
33 </help> 30 </help>
34 </tool> 31 </tool>