Mercurial > repos > gga > chado_export_export_fasta
diff export_export_fasta.xml @ 0:5f69e36413a4 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
author | gga |
---|---|
date | Thu, 21 Jun 2018 08:42:42 -0400 |
parents | |
children | 2875b454d1c2 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/export_export_fasta.xml Thu Jun 21 08:42:42 2018 -0400 @@ -0,0 +1,34 @@ +<?xml version="1.0"?> +<tool id="export_export_fasta" name="Chado export fasta" version="@WRAPPER_VERSION@.0"> + <description></description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <code file="chado.py"/> + <command detect_errors="aggressive"><![CDATA[ +@AUTH@ + +chakin export export_fasta +'$organism' + + > $results + ]]></command> + <inputs> + <!-- arguments --> + <param argument="--organism" + type="select" + dynamic_options="list_organisms()" + label="Organism" /> + <expand macro="wait_for"/> + + </inputs> + <outputs> + <data format="fasta" name="results"/> + </outputs> + <help> +Export reference sequences as fasta. + +@HELP@ + </help> +</tool>