view export_export_fasta.xml @ 19:33a5e7ad064d draft

"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit fa25d58f87bfe8b12dc9a497c08855ee5d8ff641"
author gga
date Thu, 24 Jun 2021 09:09:46 +0000
parents 20e02d166534
children
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<?xml version="1.0"?>
<tool id="export_export_fasta" name="Chado export fasta" version="@WRAPPER_VERSION@">
    <description></description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <code file="chado.py"/>
    <command detect_errors="aggressive"><![CDATA[
@START_PSQL@ &&

chakin export export_fasta
'$organism'

 > '$results'

 @STOP_PSQL@
    ]]></command>
    <inputs>
        <expand macro="psql_target"/>
        <!-- arguments -->
        <param argument="--organism" type="select" dynamic_options="list_organisms()" label="Organism" />
        <expand macro="wait_for"/>

    </inputs>
    <outputs>
        <data format="fasta" name="results"/>
    </outputs>
    <help>
Export reference sequences as fasta.

@HELP@
    </help>
</tool>