Mercurial > repos > gga > chado_export_export_fasta

view export_export_fasta.xml @ 8:961b3c116e86 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f6b1d17247047ed5c7701f81d546fb41eb5e2ac8
author gga
date Thu, 24 Jan 2019 03:16:03 -0500
parents 2875b454d1c2
children 65b10109e3fe
line wrap: on
line source

<?xml version="1.0"?>
<tool id="export_export_fasta" name="Chado export fasta" version="@WRAPPER_VERSION@.0">
    <description></description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <code file="chado.py"/>
    <command detect_errors="aggressive"><![CDATA[
@AUTH@

chakin export export_fasta
'$organism'

 > $results
    ]]></command>
    <inputs>
        <!-- arguments -->
        <param argument="--organism" type="select" dynamic_options="list_organisms()" label="Organism" />
        <expand macro="wait_for"/>

    </inputs>
    <outputs>
        <data format="fasta" name="results"/>
    </outputs>
    <help>
Export reference sequences as fasta.

@HELP@
    </help>
</tool>