view export_export_gbk.xml @ 10:f591d334d1f8 draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
author gga
date Mon, 08 Jul 2019 05:35:24 -0400
parents 436695550ddc
children abfe34f63772
line wrap: on
line source

<?xml version="1.0"?>
<tool id="export_export_gbk" name="Chado export gbk" version="@WRAPPER_VERSION@.0">
    <description></description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <code file="chado.py"/>
    <command detect_errors="aggressive"><![CDATA[
@START_PSQL@ &&

chakin export export_gbk
'$organism'

 > '$results'

 && @STOP_PSQL@
    ]]></command>
    <inputs>
        <expand macro="psql_target"/>
        <!-- arguments -->
        <param argument="--organism"
               type="select"
               dynamic_options="list_organisms()"
               label="Organism" />

        <!-- options -->
        <expand macro="wait_for"/>

    </inputs>
    <outputs>
        <data format="genbank" name="results"/>
    </outputs>
    <help>
Export organism features as genbank

@HELP@
    </help>
</tool>