Mercurial > repos > gga > chado_expression_add_expression
comparison expression_add_expression.xml @ 0:c09e35ef9d09 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
| author | gga |
|---|---|
| date | Mon, 05 Nov 2018 08:04:56 -0500 |
| parents | |
| children | 4f42edf27351 |
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| -1:000000000000 | 0:c09e35ef9d09 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool id="expression_add_expression" name="Chado expression add" version="@WRAPPER_VERSION@.0"> | |
| 3 <description></description> | |
| 4 <macros> | |
| 5 <import>macros.xml</import> | |
| 6 </macros> | |
| 7 <expand macro="requirements"/> | |
| 8 <code file="chado.py"/> | |
| 9 <command detect_errors="aggressive"><![CDATA[ | |
| 10 @AUTH@ | |
| 11 | |
| 12 chakin expression add_expression | |
| 13 '$organism_id' | |
| 14 '$analysis_id' | |
| 15 '$file_path' | |
| 16 | |
| 17 > $results | |
| 18 ]]></command> | |
| 19 <inputs> | |
| 20 <!-- arguments --> | |
| 21 <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" /> | |
| 22 <param argument="analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" /> | |
| 23 <param name="file_path" label="Expression matrix" argument="file_path" type="data" format="tabular" help="Tabular file where columns are experimental conditions, and rows are features" /> | |
| 24 | |
| 25 <expand macro="wait_for"/> | |
| 26 </inputs> | |
| 27 <outputs> | |
| 28 <data format="txt" name="results"/> | |
| 29 </outputs> | |
| 30 <help> | |
| 31 Add an expression matrix file to the database | |
| 32 | |
| 33 @HELP@ | |
| 34 </help> | |
| 35 </tool> |