Mercurial > repos > gga > chado_expression_add_expression
view expression_add_expression.xml @ 6:546ea3a2a7f7 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit bc69ce09372c8c2701b726c326e671af279adb4d
author | gga |
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date | Thu, 11 Jul 2019 08:36:59 -0400 |
parents | a64f1f154f8c |
children | 126fc4d52d4e |
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<?xml version="1.0"?> <tool id="expression_add_expression" name="Chado expression add" version="@WRAPPER_VERSION@.1"> <description></description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <code file="chado.py"/> <command detect_errors="aggressive"><![CDATA[ @START_PSQL@ && chakin expression add_expression '$organism_id' '$analysis_id' '$file_path' > '$results' @ZIP_PSQL@ ]]></command> <inputs> <expand macro="psql_target"/> <!-- arguments --> <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" /> <param argument="analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" /> <param name="file_path" label="Expression matrix" argument="file_path" type="data" format="tabular" help="Tabular file where columns are experimental conditions, and rows are features" /> <expand macro="wait_for"/> </inputs> <outputs> <data format="txt" name="results"/> <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}"> <filter>psql_target['method'] == "pgtools"</filter> </data> </outputs> <help> Add an expression matrix file to the database @HELP@ </help> </tool>