Mercurial > repos > gga > chado_expression_delete_all_biomaterials

diff README.rst @ 0:db7db54dd2d8 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
author gga
date Mon, 05 Nov 2018 08:04:11 -0500
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+Galaxy-chado
+=============
+
+Galaxy tools to interface with Tripal using python-chado
+
+Dependencies
+------------
+
+You will need to install some python modules in the Galaxy virtualenv for these
+tools to be fully functional:
+
+.. code:: bash
+
+    . /path/to/galaxy/.venv/bin/activate
+    pip install future chado
+    deactivate
+
+Environment
+-----------
+
+The following environment variables must be set:
+
++--------------------------------+-----------------------------------------------------------+
+| ENV                            | Use                                                       |
++================================+===========================================================+
+| ``$GALAXY_CHADO_DBHOST``       | Host of the Chado database                                |
++--------------------------------+-----------------------------------------------------------+
+| ``$GALAXY_CHADO_DBNAME``       | Name of the Chado database                                |
++--------------------------------+-----------------------------------------------------------+
+| ``$GALAXY_CHADO_DBUSER``       | Username to connect to the database                       |
++--------------------------------+-----------------------------------------------------------+
+| ``$GALAXY_CHADO_DBPASS``       | Password to connect to the database                       |
++--------------------------------+-----------------------------------------------------------+
+| ``$GALAXY_CHADO_DBSCHEMA``     | Database schema.                                          |
++--------------------------------+-----------------------------------------------------------+
+| ``$GALAXY_CHADO_DBPORT``       | Port of the Chado database                                |
++--------------------------------+-----------------------------------------------------------+
+
+
+License
+-------
+
+All python scripts and wrappers are licensed under MIT license.