Mercurial > repos > gga > chado_expression_delete_all_biomaterials
view prepare_psql.sh @ 16:ded53bbfd8ab draft default tip
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 20d8d84d66eb27f870cadb94a02c97806090df24
| author | gga |
|---|---|
| date | Wed, 11 May 2022 14:42:26 +0000 |
| parents | 3a3791f72693 |
| children |
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#!/bin/bash export PWD=`pwd` && sed -i.bak "s|unix_socket_directories.*|unix_socket_directories = '$PWD/postgresql/'|" ./postgresql/db/postgresql.conf && pglite start -d ./postgresql && timeout 60 bash -c 'until pglite status -d ./postgresql | grep -F -q "server is running"; do sleep 1; done' && pglite status -d ./postgresql && timeout 60 bash -c 'until ls -la ./postgresql | grep -F -q ".s.PGSQL.5432"; do sleep 1; done' && pglite status -d ./postgresql && echo "__default: local" > '.auth.yml' && echo "local:" >> '.auth.yml' && echo " dbhost: \"xxx\"" >> '.auth.yml' && echo " dbname: \"xxx\"" >> '.auth.yml' && echo " dbpass: \"xxx\"" >> '.auth.yml' && echo " dbuser: \"xxx\"" >> '.auth.yml' && echo " dbschema: \"$1\"" >> '.auth.yml' && echo " dbport: \"xxx\"" >> '.auth.yml' && echo " dburl: \"$(pglite url -d ./postgresql)\"" >> '.auth.yml' && export CHAKIN_GLOBAL_CONFIG_PATH='.auth.yml'