Mercurial > repos > gga > chado_expression_delete_biomaterials

diff expression_delete_biomaterials.xml @ 5:9e40ea0d1530 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
author gga
date Mon, 08 Jul 2019 05:37:25 -0400
parents 769bcd006045
children 79d117de8e30
line wrap: on
line diff
--- a/expression_delete_biomaterials.xml	Tue Mar 05 05:16:05 2019 -0500
+++ b/expression_delete_biomaterials.xml	Mon Jul 08 05:37:25 2019 -0400
@@ -7,7 +7,7 @@
     <expand macro="requirements"/>
     <code file="chado.py"/>
     <command detect_errors="aggressive"><![CDATA[
-@AUTH@
+@START_PSQL@ &&
 
 chakin expression delete_biomaterials
 
@@ -24,8 +24,11 @@
   --analysis_id '$analysis_id'
 #end if
  > '$results'
+
+ && @ZIP_PSQL@
     ]]></command>
     <inputs>
+        <expand macro="psql_target"/>
         <!-- options -->
         <param argument="--organism_id" type="select" dynamic_options="list_organisms()" label="Organism" optional="true" />
         <param argument="--analysis_id" type="select" dynamic_options="list_analyses()"  label="Analysis" optional="true" />
@@ -36,6 +39,9 @@
     </inputs>
     <outputs>
         <data format="txt" name="results"/>
+        <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}">
+          <filter>psql_target['method'] == "pgtools"</filter>
+        </data>
     </outputs>
     <help>
 Will delete biomaterials based on selector. Only one selector will be used.