Mercurial > repos > gga > chado_expression_get_biomaterials

diff expression_get_biomaterials.xml @ 2:3df5eaa8ae44 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
author gga
date Fri, 23 Nov 2018 11:18:22 -0500
parents 2dc7f958f3ff
children 426fba75486d
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line diff
--- a/expression_get_biomaterials.xml	Mon Nov 05 12:22:00 2018 -0500
+++ b/expression_get_biomaterials.xml	Fri Nov 23 11:18:22 2018 -0500
@@ -1,12 +1,12 @@
 <?xml version="1.0"?>
 <tool id="expression_get_biomaterials" name="Chado biomaterial get" version="@WRAPPER_VERSION@.0">
- <description></description>
-	<macros>
-		<import>macros.xml</import>
-	</macros>
-	<expand macro="requirements"/>
+    <description></description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
     <code file="chado.py"/>
-	<command detect_errors="aggressive"><![CDATA[
+    <command detect_errors="aggressive"><![CDATA[
 @AUTH@
 
 chakin expression get_biomaterials
@@ -29,22 +29,22 @@
 
 | jq -S . > $results
     ]]></command>
-	<inputs>
-	    <!-- options -->
-		<param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" optional="true" />
-		<param argument="analysis_id" type="select" dynamic_options="list_analyses()"  label="Analysis" optional="true" />
-		<param name="provider_id" label="Provider Id" argument="provider_id" type="text" help="Limit query to the selected provider" optional="true" />
-		<param name="biomaterial_id" label="Biomaterial Id" argument="biomaterial_id" type="text" help="Limit query to the selected biomaterial id" optional="true" />
-		<param name="biomaterial_name" label="Biomaterial Name" argument="biomaterial_name" type="text" help="Limit query to the selected biomaterial name" optional="true" />
+    <inputs>
+        <!-- options -->
+        <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" optional="true" />
+        <param argument="analysis_id" type="select" dynamic_options="list_analyses()"  label="Analysis" optional="true" />
+        <param name="provider_id" label="Provider Id" argument="provider_id" type="text" help="Limit query to the selected provider" optional="true" />
+        <param name="biomaterial_id" label="Biomaterial Id" argument="biomaterial_id" type="text" help="Limit query to the selected biomaterial id" optional="true" />
+        <param name="biomaterial_name" label="Biomaterial Name" argument="biomaterial_name" type="text" help="Limit query to the selected biomaterial name" optional="true" />
 
-		<expand macro="wait_for"/>
-	</inputs>
-	<outputs>
-		<data format="json" name="results"/>
-	</outputs>
-	<help>
+        <expand macro="wait_for"/>
+    </inputs>
+    <outputs>
+        <data format="json" name="results"/>
+    </outputs>
+    <help>
 List biomaterials in the database
 
 @HELP@
-	</help>
+    </help>
 </tool>