Mercurial > repos > gga > chado_feature_delete_features

comparison feature_delete_features.xml @ 0:458734a6b936 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
author gga
date Thu, 21 Jun 2018 08:43:16 -0400
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1 <?xml version="1.0"?>
2 <tool id="feature_delete_features" name="Chado features delete" version="@WRAPPER_VERSION@.0">
3 <description></description>
4 <macros>
5 <import>macros.xml</import>
6 </macros>
7 <expand macro="requirements"/>
8 <code file="chado.py"/>
9 <command detect_errors="aggressive"><![CDATA[
10 @AUTH@
11
12 chakin feature delete_features
13
14 #if $organism:
15 --organism_id '$organism'
16 #end if
17 #if $analysis_id:
18 --analysis_id '$analysis_id'
19 #end if
20 #if $name:
21 --name '$name'
22 #end if
23 #if $uniquename:
24 --uniquename '$uniquename'
25 #end if
26
27 | jq -S . > $results
28 ]]></command>
29 <inputs>
30 <!-- arguments -->
31
32 <!-- options -->
33 <param argument="--organism"
34 type="select"
35 dynamic_options="list_organisms()"
36 label="Organism" />
37 <param argument="--analysis_id"
38 type="select"
39 dynamic_options="list_analyses()"
40 label="Analysis" />
41 <param name="name" label="Name" argument="name" type="text" help="name filter" />
42 <param name="uniquename" label="Uniquename" argument="uniquename" type="text" help="uniquename filter" />
43
44 </inputs>
45 <outputs>
46 <data format="json" name="results"/>
47 </outputs>
48 <help>
49 Get all or some features
50
51 @HELP@
52 </help>
53 </tool>