Mercurial > repos > gga > chado_feature_delete_features

comparison feature_delete_features.xml @ 10:52fe2a335964 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
author gga
date Mon, 08 Jul 2019 05:33:59 -0400
parents 4c973d69c8e6
children 926dbc8a33a1
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9:4c973d69c8e6 10:52fe2a335964
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <code file="chado.py"/> 8 <code file="chado.py"/>
9 <command detect_errors="aggressive"><![CDATA[ 9 <command detect_errors="aggressive"><![CDATA[
10 @AUTH@ 10 @START_PSQL@ &&
11 11
12 chakin feature delete_features 12 chakin feature delete_features
13 13
14 #if $organism: 14 #if $organism:
15 --organism_id '$organism' 15 --organism_id '$organism'
23 #if $uniquename: 23 #if $uniquename:
24 --uniquename '$uniquename' 24 --uniquename '$uniquename'
25 #end if 25 #end if
26 26
27 | jq -S . > '$results' 27 | jq -S . > '$results'
28
29 && @ZIP_PSQL@
28 ]]></command> 30 ]]></command>
29 <inputs> 31 <inputs>
30 <!-- options --> 32 <expand macro="psql_target"/>
31 <param argument="--organism" type="select" dynamic_options="list_organisms()" label="Organism" /> 33 <!-- options -->
32 <param argument="--analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" /> 34 <param argument="--organism" type="select" dynamic_options="list_organisms()" label="Organism" />
33 <param name="name" label="Name" argument="--name" type="text" help="name filter" /> 35 <param argument="--analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" />
34 <param name="uniquename" label="Uniquename" argument="--uniquename" type="text" help="uniquename filter" /> 36 <param name="name" label="Name" argument="--name" type="text" help="name filter" />
35 37 <param name="uniquename" label="Uniquename" argument="--uniquename" type="text" help="uniquename filter" />
36 </inputs> 38 </inputs>
37 <outputs> 39 <outputs>
38 <data format="json" name="results"/> 40 <data format="json" name="results"/>
41 <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}">
42 <filter>psql_target['method'] == "pgtools"</filter>
43 </data>
39 </outputs> 44 </outputs>
40 <help> 45 <help>
41 Get all or some features 46 Get all or some features
42 47
43 @HELP@ 48 @HELP@