Mercurial > repos > gga > chado_feature_get_features

comparison feature_get_features.xml @ 7:d3ffd510c98a draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
author gga
date Fri, 23 Nov 2018 11:16:40 -0500
parents 1494f2f25439
children 51f5137232ff
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6:ad5111ebc9e4 7:d3ffd510c98a
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="feature_get_features" name="Chado features get" version="@WRAPPER_VERSION@.0"> 2 <tool id="feature_get_features" name="Chado features get" version="@WRAPPER_VERSION@.0">
3 <description></description> 3 <description></description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <code file="chado.py"/> 8 <code file="chado.py"/>
9 <command detect_errors="aggressive"><![CDATA[ 9 <command detect_errors="aggressive"><![CDATA[
10 @AUTH@ 10 @AUTH@
11 11
12 chakin feature get_features 12 chakin feature get_features
13 13
14 #if $organism: 14 #if $organism:
24 --uniquename '$uniquename' 24 --uniquename '$uniquename'
25 #end if 25 #end if
26 26
27 | jq -S . > $results 27 | jq -S . > $results
28 ]]></command> 28 ]]></command>
29 <inputs> 29 <inputs>
30 <!-- arguments --> 30 <!-- options -->
31 <param argument="--organism" type="select" dynamic_options="list_organisms()" label="Organism" />
32 <param argument="--analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" />
33 <param name="name" label="Name" argument="--name" type="text" help="name filter" />
34 <param name="uniquename" label="Uniquename" argument="--uniquename" type="text" help="uniquename filter" />
31 35
32 <!-- options --> 36 </inputs>
33 <param argument="--organism" 37 <outputs>
34 type="select" 38 <data format="json" name="results"/>
35 dynamic_options="list_organisms()" 39 </outputs>
36 label="Organism" /> 40 <help>
37 <param argument="--analysis_id"
38 type="select"
39 dynamic_options="list_analyses()"
40 label="Analysis" />
41 <param name="name" label="Name" argument="name" type="text" help="name filter" />
42 <param name="uniquename" label="Uniquename" argument="uniquename" type="text" help="uniquename filter" />
43
44 </inputs>
45 <outputs>
46 <data format="json" name="results"/>
47 </outputs>
48 <help>
49 Get all or some features 41 Get all or some features
50 42
51 @HELP@ 43 @HELP@
52 </help> 44 </help>
53 </tool> 45 </tool>